Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value SEQ23930 226 7e-57 >SEQ23930 Length=1308 Score = 226 bits (250), Expect = 7e-57 Identities = 164/190 (86%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| |||||| || || || |||||||| | |||||||||||||| |||||||| Sbjct 1019 TTTACAATCCGAAGACCGTCATCCCCCACGCGGCGTCGCTGCATCAGGCTTTCGCCCATT 1078 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1079 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1138 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | ||| |||||||| || |||| ||||||||| ||| |||||||||||| ||| Sbjct 1139 GGCCGATCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCACCA 1198 Query 185 ACTAGCTAAT 194 || |||| || Sbjct 1199 ACAAGCTGAT 1208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221980692352