Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value SEQ23930 374 3e-101 >SEQ23930 Length=1308 Score = 374 bits (414), Expect = 3e-101 Identities = 296/354 (84%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 144 CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCG 203 |||| |||||| |||||| | || |||| |||||| ||||| ||| |||||||||| Sbjct 1232 CGGTGCAGGATGAGCCCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTACCAAGGCG 1173 Query 204 ACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263 |||| ||||||| |||||||||||||||||||||| ||| |||||||||||| ||| | Sbjct 1172 ACGACGGGTAGCCGGCCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGA 1113 Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1112 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCGAC 1053 Query 324 GCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-----TA 378 |||||||| | ||||| || |||||| | ||||| | || || | ||| || | Sbjct 1052 GCCGCGTGGGGGATGACGGTCTTCGGATTGTAAACCCCTTTCAGTAGGGACGAAGCGCAA 993 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 ||||||||| || || ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 992 GTGACGGTACCTGCAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGT 933 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||| || |||||| |||||||||||| |||||||||| | |||||| ||||| Sbjct 932 AGGGTGCGAGCGTTGTCCGGAATTACT-GGGCGTAAAGAGCTCGTAGGCGGTTT 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497086293248