Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq435 165 2e-38 seq588 109 1e-21 >seq435 Length=768439 Score = 165 bits (182), Expect = 2e-38 Identities = 187/247 (76%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 132158 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 132215 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||| ||||||||| | || | || | Sbjct 132216 ATGCCCTTAGATGTCCGGGGCTGCACGCGCACTACACTGAGTGGCTCAGCTTGTGTCTAC 132275 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 132276 CCTCCGCCGGCAGGCGAGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 132335 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 132336 CAATTGTTCCCCGTGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 132395 Query 311 ACGTCCC 317 | ||||| Sbjct 132396 AAGTCCC 132402 >seq588 Length=544423 Score = 109 bits (120), Expect = 1e-21 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||||||| Sbjct 348190 GCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATT 348249 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| ||| Sbjct 348250 GTTCCCCGTGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTTAGTC 348309 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 348310 CCTGCCCTTTGTA 348322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946875091456