Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value SEQ32950 212 2e-52 SEQ19659 212 2e-52 seq2445 212 2e-52 seq2333 212 2e-52 seq4964 208 2e-51 seq917 147 7e-33 seq196 116 1e-23 seq119 109 2e-21 seq79 102 3e-19 seq2635 91.5 5e-16 seq199 86.0 2e-14 seq726 78.8 3e-12 >SEQ32950 Length=1030 Score = 212 bits (234), Expect = 2e-52 Identities = 280/393 (71%), Gaps = 54/393 (14%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 1018 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 959 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||||| |||| || ||| | Sbjct 958 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC-----CCTGGAGC 904 Query 127 GGCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTCCGCT 179 || |||| || | ||| |||||||| | || ||| || |||| Sbjct 903 GGGTCGCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTCAGTGCTCGCCCCC-CCGCC 845 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-------CCG-- 230 ||| | ||||| |||||||||| || ||||||||||||||| ||| ||| Sbjct 844 TCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCGGGGCCGCG 785 Query 231 --AAA----------------------CGG--------CTCCCACTTATTCTACACCTCT 258 | | ||| |||||||||||||||||||||| Sbjct 784 GCACAGCAGGGGTGACCTGCGCGACCGCGGGCAGTGGCCTCCCACTTATTCTACACCTCT 725 Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| |||||| | | |||||||||||||||||||||||||||||||||| ||||| Sbjct 724 CATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 665 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||| |||||||||||||||||||||||||||| Sbjct 664 TTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTC 632 >SEQ19659 Length=1507 Score = 212 bits (234), Expect = 2e-52 Identities = 280/393 (71%), Gaps = 54/393 (14%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 1448 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 1389 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||||| |||| || ||| | Sbjct 1388 TTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC-----CCTGGAGC 1334 Query 127 GGCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTCCGCT 179 || |||| || | ||| |||||||| | || ||| || |||| Sbjct 1333 GGGTCGCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTCAGTGCTCGCCCCC-CCGCC 1275 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-------CCG-- 230 ||| | ||||| |||||||||| || ||||||||||||||| ||| ||| Sbjct 1274 TCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCGGGGCCGCG 1215 Query 231 --AAA----------------------CGG--------CTCCCACTTATTCTACACCTCT 258 | | ||| |||||||||||||||||||||| Sbjct 1214 GCACAGCAGGGGTGACCCGCGCGACCGCGGGCAGTGGCCTCCCACTTATTCTACACCTCT 1155 Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| |||||| | | |||||||||||||||||||||||||||||||||| ||||| Sbjct 1154 CATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 1095 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||| |||||||||||||||||||||||||||| Sbjct 1094 TTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTC 1062 >seq2445 Length=11563 Score = 212 bits (234), Expect = 2e-52 Identities = 279/393 (71%), Gaps = 54/393 (14%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 5571 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 5512 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||||| |||| || ||| | Sbjct 5511 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC-----CCTGGAGC 5457 Query 127 GGCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTCCGCT 179 || |||| || | ||| |||||||| | || ||| || |||| Sbjct 5456 GGGTCGCGCCGGGCACTTGGCGCCAGAAGCGAGAGCCCTTCAGTGCTCGCCCCC-CCGCC 5398 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-------CCGA- 231 ||| | ||||| |||||||||| || ||||||||||||||| ||| ||| Sbjct 5397 TCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCGGGGCCGCG 5338 Query 232 ----AACGG-----------------------------CTCCCACTTATTCTACACCTCT 258 | ||| |||||||||||||||||||||| Sbjct 5337 GCACAGCGGGGGTGACCCGCGCGACCGCGGGCAGTGGCCTCCCACTTATTCTACACCTCT 5278 Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| |||||| | | |||||||||||||||||||||||||||||||||| ||||| Sbjct 5277 CATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 5218 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||| |||||||||||||||||||||||||||| Sbjct 5217 TTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTC 5185 >seq2333 Length=12123 Score = 212 bits (234), Expect = 2e-52 Identities = 277/388 (71%), Gaps = 54/388 (14%) Strand=Plus/Plus Query 12 GCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTA 71 |||| || |||| |||||| |||| |||| | ||||||||||||||||||| | ||| Sbjct 11111 GCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACGCTTTG 11170 Query 72 ACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCC 131 |||| ||| ||||||||| |||||||||||||||||| |||| || ||| ||| | Sbjct 11171 ACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACACTGTC-----CCTGGAGCGGGTC 11225 Query 132 GCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTCCGCTTCATT 184 ||| || | ||| |||||||| | || ||| || |||| ||| Sbjct 11226 GCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCATCAGTGCTCGCCCCC-CCGCCTCACC 11284 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-------CCG----AAA 233 | ||||| |||||||||| || ||||||||||||||| ||| ||| | | Sbjct 11285 GGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCGGGGCCGCGGCACA 11344 Query 234 ----------------------CGG--------CTCCCACTTATTCTACACCTCTCAAGT 263 ||| |||||||||||||||||||||||| || Sbjct 11345 GCAGGGGTGACCCGCGCGACCGCGGGCAGTGGCCTCCCACTTATTCTACACCTCTCATGT 11404 Query 264 CATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG 323 | |||||| | | |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 11405 CTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCCA 11464 Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||||||||||| Sbjct 11465 CCAAGCCCGTTCCCTTGGCTGTGGTTTC 11492 >seq4964 Length=6702 Score = 208 bits (230), Expect = 2e-51 Identities = 278/393 (71%), Gaps = 54/393 (14%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 6365 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 6306 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||||| |||| || ||| | Sbjct 6305 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC-----CCTGGAGC 6251 Query 127 GGCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTTCCGCT 179 || | || || | ||| |||||||| | || ||| || |||| Sbjct 6250 GGGTCACGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTCAGTGCTCGCCCCC-CCGCC 6192 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-------CCGA- 231 ||| | ||||| |||||||||| || ||||||||||||||| ||| ||| Sbjct 6191 TCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCGGGTCCGCG 6132 Query 232 ----AACGG-----------------------------CTCCCACTTATTCTACACCTCT 258 | ||| |||||||||||||||||||||| Sbjct 6131 GCACAGCGGGGGTGACCCGCGCGACCGCGGGCAGTGGCCTCCCACTTATTCTACACCTCT 6072 Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| |||||| | | |||||||||||||||||||||||||||||||||| ||||| Sbjct 6071 CATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGCTGA 6012 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||| |||||||||||||||||||||||||||| Sbjct 6011 TTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTC 5979 >seq917 Length=244848 Score = 147 bits (162), Expect = 7e-33 Identities = 84/86 (98%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14881 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 14822 Query 460 CGTTTACCCGCGCTTGGTTGAATTTC 485 ||||||||||||||| ||||||||| Sbjct 14821 CGTTTACCCGCGCTTCATTGAATTTC 14796 >seq196 Length=1382158 Score = 116 bits (128), Expect = 1e-23 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 ||| ||||||| || || |||||||||| |||||||||||||||||| | || Sbjct 1355961 TCCGTTCATGCATTTCCCTGATTAGATGACAGAATGTTTGGCTACCTTAAGAGAATTGTA 1355902 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 |||||||||||| |||| || | | ||||| |||||||||||||| ||||| ||||| Sbjct 1355901 GTTACTCCCGCCATTTATCCATGTGTCATTGAACTTCTTCACTTTGACGTTCAGGGCACT 1355842 Query 509 GGGCAGAAATCA 520 |||||||| ||| Sbjct 1355841 GGGCAGAAGTCA 1355830 >seq119 Length=1774174 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 1068999 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 1069058 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||| ||| ||||||||| ||||||||| ||||||| |||| || Sbjct 1069059 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCAACCTGACGCTGTCCTC 1069108 >seq79 Length=2166938 Score = 102 bits (112), Expect = 3e-19 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 246257 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 246316 Query 67 GTTTAACAGATGTGCCGCCCCAG-CCAAACTCCCCACCTGA 106 ||| |||| ||| ||||||||| | ||||||||||||||| Sbjct 246317 CTTTGACAGGTGTACCGCCCCAGTCAAAACTCCCCACCTGA 246357 >seq2635 Length=10915 Score = 91.5 bits (100), Expect = 5e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | |||||||||||||| |||| | Sbjct 3909 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGTGTTACG 3850 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 || |||| ||| ||||||||| ||||||||||| Sbjct 3849 CTTGGACAGGTGTACCGCCCCAGTCAAACTCCCCA 3815 >seq199 Length=1350134 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | |||| ||||||||| |||| Sbjct 913970 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCACCTTGGGACACCTGTGTTACA 914029 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 ||| |||| ||| ||||||||| ||||||||||| Sbjct 914030 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCA 914064 >seq726 Length=391059 Score = 78.8 bits (86), Expect = 3e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | ||| ||||||| |||||| |||| |||| | |||||||||||||| |||||| Sbjct 221840 CTTCTACTCCACAGGAGGTTTCTGGACTCCCTGAGCTCGCCTTAGGACACCTGTGTTATG 221781 Query 67 GTTTAACAGATGTGCCGCCCCAG 89 ||| |||| ||| | ||||||| Sbjct 221780 CTTTGACAGGTGTACTGCCCCAG 221758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634639093696