Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value SEQ25496 760 0.0 >SEQ25496 Length=1249 Score = 760 bits (842), Expect = 0.0 Identities = 508/564 (90%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||| ||||||||||||||||||||||| |||||| |||||||||||| Sbjct 573 TCGACGTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTGCACTCAACACCTGATTGCC 632 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 633 ATCCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTGGGAGG-CAACCGCCCCAG 691 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 692 TTAAACTACCCACCAGGCACTGTCCCTAACCCAGATCATGGGCCGAGGTTAGACGTCCAA 751 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 |||| |||||||||||||||||||||||||||||| |||| ||||| || ||| ||| Sbjct 752 TACGATCAGAGTGGTATTTCAACAACGACTCCACACACACTGGCGTGCATGCTTCACAGT 811 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 |||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| Sbjct 812 CTCCCACCTATCCTACACAAACCGAATCGAACGCCAATACCAAGCTATAGTAAAGGTCCC 871 Query 301 GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGG 360 |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| Sbjct 872 GGGGTCTTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCGA 931 Query 361 GCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 420 | ||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 932 GTCTGTGGTCGAGACAGCAGAGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 991 Query 421 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 992 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAA 1051 Query 481 ATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGG 540 ||| | || || | | || ||| || |||||||||||||||||||||||| Sbjct 1052 ATTCTCAGCTTCGC------CTTG--CGGCTAACCGGTCCTCTTAACCTTCCAGCACCGG 1103 Query 541 GCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||||||||||| ||| Sbjct 1104 GCAGGCGTCAGTCCGTATACATCG 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701816042752