Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2445 95.1 2e-17 seq55 73.4 6e-11 >seq2445 Length=11563 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 5896 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGACTGAGGAGCCACT 5953 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 5954 GGAGCGAGGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 6007 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 11243 GCGAGGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 11293 >seq55 Length=2404364 Score = 73.4 bits (80), Expect = 6e-11 Identities = 83/109 (76%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 2229457 GTACGAGAGGAACCCATG--TTCAGAC-ATTTGGTGTATGTGCTTGACTGAGGAGCCACT 2229401 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAG 109 | || | ||||||||||| |||||||| ||||| ||||||||||||| Sbjct 2229400 GGAGCAAGGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAG 2229352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818927779328