Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1256 116 3e-21 seq184 104 2e-17 seq518 102 6e-17 >seq1256 Length=67100 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || || || ||||||||||| ||||| ||||| |||| ||||| || Sbjct 29728 GGTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 29787 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| | ||||| | || ||||||| |||||| || ||||| ||||| || Sbjct 29788 ATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTG 29847 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| |||||||||| || ||||| || | ||||||||| Sbjct 29848 CGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 29887 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| |||||||| |||||||| || |||| || || | || || |||||||| | Sbjct 31012 CATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGCTCCTCCTT 31071 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || ||||| |||||||| ||||| || ||||||| Sbjct 31072 CCCAGTG-TTCTTCTTTAAGTCCAGAAACTCGAAGATGTCCAGGTGCCACGGCTCCAGGT 31130 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 31131 AGATGGCAAA--AGCCC 31145 >seq184 Length=1437213 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || ||||| | | ||||||||||||||||| |||||||||| Sbjct 72296 TGGAGCGGTTCAGTCAAGAAGTGCAGATTACAGAGGCGCGTTGTTTCTATGGCTTCCAGA 72355 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | ||||| || ||||||||| ||||||| || || ||||| Sbjct 72356 TTGCCATGGAAAACATACACTCAGAAATGTACAGTCTTCTCATTGACACATACAT 72410 >seq518 Length=643042 Score = 102 bits (112), Expect = 6e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 ||| ||| ||| || ||||||||||| | | || || ||||||||||| ||||||||| Sbjct 340241 TGGCACGCTTTAGC-CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAG 340183 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||| ||| |||||||| ||||||||||||||||| | || || || || ||||||| Sbjct 340182 ATTCTCATTGAGAATGTTCACTCGGAGATGTACAGCTTGCTTATAGACACTTACATCA 340125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397401794461280