Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq8060 251 2e-62 >seq8060 Length=4340 Score = 251 bits (278), Expect = 2e-62 Identities = 493/725 (68%), Gaps = 20/725 (3%) Strand=Plus/Minus Query 8887 GATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCCGCGCAGGTGTTCGAGCCGTCC 8946 |||||||| | ||||||||||| || || ||| ||||| ||||| ||||| || || Sbjct 4151 GATGTAGTGCTTGAGGTTGCGGAAGCCCAGGGCGATTCCGCGGAGGTGCTCGAGGCGACC 4092 Query 8947 GTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGGTCGTTCGAAGTAGGCGAGCACGTC 9006 ||||| |||||| || |||||| || ||| ||| ||||||||||||| | || Sbjct 4091 GTTGATGGCCTCGACGGGGCCGTTGGAGGCGCCCA--CGT-CGAAGTAGGCGAGGATCTC 4035 Query 9007 AGCGGCT-CGCTTCTTCAGGGTCCGGCCCAGGGTGGTGAGCTCGGTGAGCACCTTGGGGA 9065 ||||| |||||| ||| | ||||||||| || |||||||| ||| ||||||| | Sbjct 4034 -GCGGCGGCGCTTCCACAGCGACCGGCCCAGCTGGGCGAGCTCGGGCAGCTCCTTGGGCA 3976 Query 9066 CGCCGGCGCTNNNNNNNNNNNNNAGCTTCTCCAT---GAGCTCGCGGCCACG-TTGCCGG 9121 | ||||| | ||||| | ||| || || || | || ||||| | Sbjct 3975 CCCCGGCCCGGATCGAGCGCAGGAGCTTGTACATCGCGATCTTGCCCTCCCGCTTGCCCG 3916 Query 9122 T--CCTCGTGGCGATAGGCGGCGATCATGCGCTGGTAGACACCCCAGGTCGCCTCGACCT 9179 |||||| | |||| ||| | ||||||||||| || | || |||| ||| Sbjct 3915 AGGCCTCGT------AAGCGGTGATGAGACGCTGGTAGACGCCGTAAGTGACCTCCACCG 3862 Query 9180 CGACGTGAGCGTCATCAACGAACAGCGC---GCGTAGCCTGTCGCTCTGCTTGTCGGTGA 9236 | |||| ||||||| || | ||| | |||| | | |||||||||||||| Sbjct 3861 CCGCGTGCGCGTCATGGGCGGTGAACGCTTTGAACAGCCGGACTTGCTGCTTGTCGGTGA 3802 Query 9237 GCAGGTCCGCGCCGGTGTGCAGCGTGCGCCGCGACTTGTAGAGCGGGTCGTCCCTGAACC 9296 | || || || | ||| | || || || || | ||| ||||| ||| | ||| | Sbjct 3801 GTAGCTCAGCTCGGGTATTCATGGTCCGGCGGATCCCGTACAGCGGATCGCCACTGCGGC 3742 Query 9297 CACGGTGCCCGTGGATCGCGAGTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGG 9356 | ||||||||| | | || | |||| || | |||||| | ||| ||| ||| Sbjct 3741 CCCGGTGCCCGGTGGTGGCCTGCTGGATGCGTTGGCGGCACACGGTGAGCTTGTCCGCGG 3682 Query 9357 CCAGGCGCACGACGTGGAAGGGATCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAG 9416 |||| ||||||||||||| |||||||||||||| || || |||| | | || | Sbjct 3681 CCAGCTGCACGACGTGGAACGGATCCATCACCGTCCGGGCTTCAGGGACAGCGTTGGCGG 3622 Query 9417 CGGCGGTCTTGAACCCGGTGAAGCCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGG 9476 ||||||| | | | |||| ||| || ||||||| ||| |||| |||| ||| || || Sbjct 3621 CGGCGGTGTGGTAGCCGGCGAACCCATCCATCGTGACAACCTTGACCCGGTCTCGAAACA 3562 Query 9477 CGTCGTCGCGGTCGGCGAGCCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCATGT 9536 | | || ||| || | ||||| ||| | || | ||| |||||| |||||||| Sbjct 3561 CCTGATCACGGGCGTCCAGCCACTCGGTGAGCACCTTCGCCGAACGGCCCGGGACCATGT 3502 Query 9537 CCAGCAGCCTTGCTGGGCCGGCGCCATCGCGGACCGGGGTGAGGTCGATGATCACGGTGA 9596 ||||||| | | ||||||| ||| || ||||||||| ||||||| | ||||||| Sbjct 3501 CCAGCAGACGAGACGGGCCGGTGCCGTCCACGACCGGGGTCAGGTCGACCAGGACGGTGA 3442 Query 9597 CGTAC 9601 || || Sbjct 3441 CGAAC 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126674779743448