Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3828 104 2e-17 seq325 96.9 3e-15 seq797 91.5 1e-13 >seq3828 Length=4044606 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| |||||||||| Sbjct 1127731 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGA 1127672 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| ||||||||||| | ||||| || || ||||||| Sbjct 1127671 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 1127615 >seq325 Length=5823465 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||||| | || |||||||||||||| |||||||||||||||||||| || Sbjct 5214277 CAAGAAGTACAAGTCACAGAAGCGCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 5214218 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | || || || ||||||||| |||| || || || ||||||| Sbjct 5214217 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATCA 5214175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || ||||| || || || || | ||||||||| ||||| | || || |||| |||||| Sbjct 5215139 GACAATCCCCGCCGCTTTGTCATCTTCCCCATCCAGTATCACGACATCTGGCAGATGTAC 5215080 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || |||||||||||||||| ||||||||| Sbjct 5215079 AAGAAGGCTGAGGCTTCCTTCTGGACGGCGGAGGAGGT 5215042 >seq797 Length=179301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 |||||| || ||| || |||||||| ||||||||||| |||| || || | |||| Sbjct 66450 TTCTACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCT 66391 Query 66388 TTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 |||||||| | || ||| || || ||||| ||||||||||||||||| |||| Sbjct 66390 CTGCTCCTCCTTCCCAGTG-TTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAAGTGCC 66332 Query 66447 ATGGTTCCAGGTAGATGGCGAA 66468 | || ||||| |||||||| || Sbjct 66331 AGGGCTCCAGATAGATGGCAAA 66310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397302784375040