Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq19683 289 5e-76 seq5973 275 1e-71 seq4744 208 1e-51 seq42641 136 7e-30 seq17651 96.9 6e-18 >seq19683 Length=31300 Score = 289 bits (320), Expect = 5e-76 Identities = 222/263 (84%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||| ||||| || ||||||| || ||||||||||||||| Sbjct 1948 TCATCAGTAGGGTAAAACTAACCTATCTCACGATGGTCTAATCCTAGCTCACGTTCCCTA 1889 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| ||||||| |||| || |||||||||||| | Sbjct 1888 TTAGTGGGTGAACAATCCAACACTTGGTGAATTCTACTTCACAATAATAGGAAGAGCCCA 1829 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||||| |||||||||| | ||||||||| |||||| |||||||||||||||||| Sbjct 1828 CATCAAAGGATGAAAAAGCAACATTGCTATGAACACTTGGCCGCCACAAGCCAGTTATCC 1769 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| || Sbjct 1768 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGA 1709 Query 271 CCACACTTTCATGGTTTGTATTC 293 || |||||||||||| ||||||| Sbjct 1708 CCCCACTTTCATGGTCTGTATTC 1686 >seq5973 Length=101063 Score = 275 bits (304), Expect = 1e-71 Identities = 220/264 (83%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||| Sbjct 73284 TCATCAGTAGGGTAAAACCAACCTGTCTCATGACGGTATAATCCCAGCTGACGTTCCCTA 73343 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||| |||||| ||||||||||| ||||||||||||||| | Sbjct 73344 TTAGTGGGTGAACAATCTGACGCTTGGTGAATTCTGCTTAACAATGATAGGAAGAGCCAA 73403 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||| Sbjct 73404 CATCAAAGGATGAAAAAGCGACGTCGCTATGAATGCTTGGCTGCCACGAGCCAGTTATCT 73463 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||| |||||||||||| |||||| | || ||| | | | | ||||||| ||| Sbjct 73464 CTGTAGTAACTTTTCTGACACCTCCTG-CTTAAAACCCCAAAGCCAGAAGGATCATGAGG 73522 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || |||||| || |||||||| Sbjct 73523 CCTTGCTTTCACAGTCTGTATTCA 73546 >seq4744 Length=24147 Score = 208 bits (230), Expect = 1e-51 Identities = 135/148 (91%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 4966 CCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAG 5025 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| Sbjct 5026 CCGACATCGAAGGATCAAAAAGCGATGTCGCTATGAACGCTTGGCCACCACAAGCCAGTT 5085 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||| ||||| ||||||| |||||| Sbjct 5086 ATCCCTGCGGTAAGTTTTCTGACACCTC 5113 >seq42641 Length=40326 Score = 136 bits (150), Expect = 7e-30 Identities = 194/269 (72%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 25 CGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT 84 ||||| ||||||| || |||||||||| ||| ||| | | |||||||||||||||| || Sbjct 2813 CGACG-TCATCAGAGGGCTAAAACTAACTTGTTTCACGGCAGTCTAAACCCAGCTCAGGT 2871 Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 || | ||||||||| ||| ||||| ||| | |||||||| || | ||| | ||| Sbjct 2872 TCATTGTTAGTGGGTAAACCGACCAACACTTGCTGAATTCTGTTTTGTGGTGACAAGAAA 2931 Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||| |||||| |||| | ||| ||| | ||| || ||| ||||| || | | Sbjct 2932 AGCTGACATCAAAGGGT--TGAAGTAACTTTGCT---AATAGTTGACTGCCCCAGGGTGG 2986 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 | || ||||||||||||||||| || |||| || | ||| | || | | | | |||| Sbjct 2987 GTTTCTCTGTGGTAACTTTTCTGACAGCTCTTGCTTAAAACCTGGAAAGTC-AGAAGATC 3045 Query 265 GATAGGCCACACTTTCATGGTTTGTATTC 293 ||| |||||| ||||| ||||||| Sbjct 3046 CTAAGGTCACACTAGCATGGCCTGTATTC 3074 >seq17651 Length=38321 Score = 96.9 bits (106), Expect = 6e-18 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| | |||||||||||||||||||||||| | ||| |||||| ||||| |||| || Sbjct 10455 TCATCAATCGGGTAAAACTAACCTGTCTCATGATGATCT-AACCCAACTCACATTCCATA 10513 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 ||||||| |||| |||| ||| ||| ||||| Sbjct 10514 TTAGTGGATGAAAAATCTAACTCTTGGTGAATT 10546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853943118144