Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4906 172 2e-40 seq27845 167 7e-39 seq34317 131 5e-28 seq30048 114 4e-23 seq18709 105 2e-20 >seq4906 Length=29749 Score = 172 bits (190), Expect = 2e-40 Identities = 138/165 (84%), Gaps = 5/165 (3%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAAT 399 |||||||||||||||||||||||||| |||||||| | || ||| | | |||| Sbjct 3366 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGAGGAGCGACCAAAG 3425 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| ||||||||||||||||||||||||||||||||||||| | | | ||||||| Sbjct 3426 GAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAG 3485 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||| |||||||||||||||||| |||||||||| Sbjct 3486 ACATGCACGGCTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 3529 >seq27845 Length=60936 Score = 167 bits (184), Expect = 7e-39 Identities = 163/203 (80%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 308 CTAATAAATACACCCCTTCC-GAAG-TCGGGGTTTTTAG-CATGTATTAGCTCTAGAATT 364 || |||||| ||| | | || |||| |||| || | | |||||||||||||||||||| Sbjct 27198 CTGATAAATGCACGCATCCCCGAAGGTCGGCACTTGTCGGCATGTATTAGCTCTAGAATT 27139 Query 365 ACCACGGTTATCCATGTAGT---AAGGTA-CTATCAAATAAACGATAACTGATTTAATGA 420 ||||| |||||||| | || | || | | | |||| ||| |||||||||||||||| Sbjct 27138 ACCACAGTTATCCAAGGAGAGGGAGGGGAGCAACCAAAGGAACCATAACTGATTTAATGA 27079 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 |||||| ||||||||||||| | |||||||||||||||||||||||| ||||| Sbjct 27078 GCCATTTGCAGTTTCACTGTGCTGCCCATGTATACTTAGACATGCATGGCTTAAGCTTTG 27019 Query 481 AGACAAGCATATGACTACTGGCA 503 ||||||||||||| ||||||||| Sbjct 27018 AGACAAGCATATG-CTACTGGCA 26997 >seq34317 Length=71581 Score = 131 bits (144), Expect = 5e-28 Identities = 112/137 (82%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||| | |||| ||||| |||||||||||| |||||| |||||||||| | Sbjct 26751 CCTGCTGCCTTCCT-GCATGTCGTAGCTGTTTCTCAGGCTTCCTCTCTGGAATCGAACTC 26809 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | ||||||| | |||||| | || ||||||||| | | ||||||| |||||||| | Sbjct 26810 TGATTCCCCATCACCCGTGGTCACTATGGTAGGCAAAGACAGTACCATCAAAAGTTGACA 26869 Query 210 GGGCAGAAATTTGAATG 226 ||||||| ||| |||| Sbjct 26870 GGGCAGACATTCAAATG 26886 >seq30048 Length=56126 Score = 114 bits (126), Expect = 4e-23 Identities = 92/110 (84%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||| |||| |||||||||||||| | | || Sbjct 38120 CAAAGGAACCATAACTGATTTAATGAGTCATTTGCAGTTTCACTGTACTGCCCATGTGTA 38179 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||||||| ||||||||| ||||||||| Sbjct 38180 CTTAGACATGCATGGCTTAAGCTTTGAGATAAGCATATG-TTACTGGCAG 38228 >seq18709 Length=79806 Score = 105 bits (116), Expect = 2e-20 Identities = 90/110 (82%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||| | |||| | ||||||||||||| | | || Sbjct 20358 CAAAGGAACCGTAACTGATTTAATTAACCATCCACAGTTTCACTGTACCGCCCATGTGTA 20299 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 20298 CTTAGACATGCATGGCTTAAGCTTTGAGACAAGCATA-CACTACTGGCAG 20250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509592328704