Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15305 118 8e-22 seq17223 89.7 4e-13 seq7229 82.4 6e-11 >seq15305 Length=33806 Score = 118 bits (130), Expect = 8e-22 Identities = 125/161 (78%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 10402 GGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 10343 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||| | ||||||||| ||||||||||| || Sbjct 10342 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGTGTGCCGGTCTCTGTCTG 10283 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCAC 66207 || |||||||| || | || ||||| || | |||||||| Sbjct 10282 AGATTCAATGATAGCATACC--AGAGCTGCTGGGCCTTCAC 10244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| | || || || | ||||| ||||| || | Sbjct 8809 CATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 8750 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 8749 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 8691 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 8690 AGATGGCAAA--AGCCC 8676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 65689 TCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAA 65748 ||| | |||||||||||||| |||||||| || | || || ||||||||||||| || Sbjct 12737 TCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATGGTCTCAAA 12678 Query 65749 AATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACA 65806 ||| | | | | ||| | | ||||| || || | || |||| ||||| || Sbjct 12677 AATTTGCTGGTTCAAGCGC-TGGGCCTCGGGACTTTC-AAAGGGGTACCTCATCAAGATG 12620 Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| || ||||| || || || ||||| || |||||||||||||| ||||| ||| Sbjct 12619 AAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGACGTCTGTTGGAGCGT 12560 Query 65867 CTCGCCT 65873 ||||| Sbjct 12559 TCCGCCT 12553 >seq17223 Length=94229 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 7267 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 7326 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || || ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 7327 TTCTTATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 7383 >seq7229 Length=62315 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || ||||||||||| ||||||||||| |||||||| ||| | || || || |||||| Sbjct 743 GAAGCTCGTTGTTTCTATGGCTTCCAGATCGCCATGGAAAATATACATTCAGAAATGTAC 802 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 803 AGTCTTCTTATTGACACCTACAT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397308899219360