Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3881 120 1e-24 seq45639 114 5e-23 seq75127 104 1e-19 >seq3881 Length=9694 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| || | |||||| ||||||||||||||||||||| || |||||||||||| Sbjct 5682 GAGCATCTGTGCTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGAGTGAAGCCAGAG 5741 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || |||||| ||| | |||||||| || || | |||| Sbjct 5742 GAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACATGCAAATCAGTCTTCTGACCCGGGTC 5801 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 5802 TAGGGGCGA 5810 Score = 100 bits (110), Expect = 1e-18 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 55 GGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCG 114 |||||||||| | ||| || ||||||| | ||||| |||||||| ||| |||||| Sbjct 4852 GGAATGCAGCCCAAAACAGGTGGTAAATGCCATCTAAGGCTAAATACCGGCACAAGACCG 4911 Query 115 ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGC 174 ||||| ||| ||| ||| | ||||| ||||||| |||||| | |||||||| || || Sbjct 4912 ATAGCCAACACGTACAGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGG 4971 Query 175 ACGTGAAATTGTTGAAAGGGAAGCG 199 | |||||| || | ||| || || Sbjct 4972 GCATGAAATCATTAAGAGGTAAACG 4996 >seq45639 Length=6175 Score = 114 bits (126), Expect = 5e-23 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||| || | |||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 2951 AGCATCTGTGCTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGG 2892 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| | |||||| ||| ||||| ||||| | ||| | ||| | Sbjct 2891 AAACTCTGGTGGAGGTCCCTAGCGGTCCTGACGTGCGAATCGGTTGTCCAGCCCAGGTCT 2832 Query 676 AGGGGC 681 |||||| Sbjct 2831 AGGGGC 2826 >seq75127 Length=211 Score = 104 bits (114), Expect = 1e-19 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 120 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 61 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| Sbjct 60 ACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077766175550