Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5963 158 2e-36 seq11409 114 2e-23 seq42357 105 1e-20 seq49804 91.5 2e-16 >seq5963 Length=31415 Score = 158 bits (174), Expect = 2e-36 Identities = 95/100 (95%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 21726 GTCTCGTTCGTTATCAGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 21785 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||| |||||| |||||||||| |||||||||| Sbjct 21786 ACCACGACCCACAGAATCGAGAAAGAGCTCTCAATCTGTC 21825 >seq11409 Length=7786 Score = 114 bits (126), Expect = 2e-23 Identities = 160/218 (73%), Gaps = 16/218 (7%) Strand=Plus/Minus Query 48 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAATAGTCCC 106 |||| | ||||||||||||| |||| || | || ||| | |||| | |||| | ||||| Sbjct 3158 AAGGACGTCACAGACCTGTTGTTGC-TCTATCT--CATGTTGCTGAATGCCACTGGTCCC 3102 Query 107 TCTAAGAAGCCAGCCACCAACCAT-----AGTCG-ATGGGGCTATTTAGCAGGTTAAGGT 160 | |||||| ||| ||| ||||| || ||| |||||| | | || Sbjct 3101 TTGAAGAAGTCAGATGTTGGCCACTGGGGAGTCGCATAA--CTAGTTAGCATGCCAGAGT 3044 Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 || ||| ||||| ||||||||||||||||||| ||||||| ||||| ||||| |||| Sbjct 3043 CTTGTTTGTTATTGGAATTAACCAGACAAATCGCTCCACC----AAGAATGGCCAGGCAC 2988 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||||||| ||| |||||| Sbjct 2987 TACCACCCATGGAACTGAGAAAGAGCTCTCAGTCTGTC 2950 >seq42357 Length=35851 Score = 105 bits (116), Expect = 1e-20 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||| Sbjct 35515 CAGACAAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATTGAGAAG 35456 Query 243 GAGCTATCAATCTGTC 258 ||||| |||||||||| Sbjct 35455 GAGCTCTCAATCTGTC 35440 >seq49804 Length=50780 Score = 91.5 bits (100), Expect = 2e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 || || ||||||||||||||| |||||| |||||||||||||||||||||||||||| | Sbjct 38992 TCTGATTTAACCAGACAAATCGCTCCACTGACTAAGAACGGCCATGCACCACCACCCACA 39051 Query 232 GAATC 236 ||||| Sbjct 39052 GAATC 39056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795996135621