Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq19097 82.4 9e-14 seq22300 77.0 4e-12 >seq19097 Length=2978 Score = 82.4 bits (90), Expect = 9e-14 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 2 GTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTA 61 || || | ||||||||||||||| | | ||||||||| |||||||| ||| ||| Sbjct 230 GTTTCCAAAAACCAACAAAATAGAACCTGA-GTCCTATTCCATTATTCCTAGCTGCAGTA 172 Query 62 TTCGGGCGTAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | | ||| | |||||||||||||||||||||||||||| ||||| Sbjct 171 TGCCAGCGGCCGGCCTGCTTTGAACACTCTAATTTTCTCAAAGTAAA 125 >seq22300 Length=40658 Score = 77.0 bits (84), Expect = 4e-12 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 || |||||||||||| | | ||||||||| |||||||| ||| |||| | |||| Sbjct 11553 AACCCAACAAAATAGAACTGGA-GTCCTATTCCATTATTCCTAGCTGCAGTATGCTGGCG 11495 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 11494 GCCGGCCTGCTTTGAACACTCTAATTTTGTCAAAGTAAA 11456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594599522994