Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11812 226 9e-57 seq35107 205 3e-50 seq3881 145 2e-32 seq66417 102 3e-19 seq65375 84.2 7e-14 seq44169 77.0 1e-11 >seq11812 Length=9545 Score = 226 bits (250), Expect = 9e-57 Identities = 166/193 (86%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 ||||||||||||||||||| | ||| |||||| | | |||||||||| |||||| || Sbjct 798 CCACTTATTCTACACCTCTTATGTCTCTTCACAGTGCCAAACTAGAGTCATGCTCAATAG 857 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||| ||||||||| ||||||| ||||| |||| ||||||||| || ||| Sbjct 858 GGTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTTCCATTGGGTGTGGTTTCACTGAATA 917 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||| |||| ||||||||||||||||| |||||||||||| | || ||||||||| ||| Sbjct 918 GTAGGTAGGAACAGTGGGAATCTCGTTCATCCATTCATGCACATCGCTAATTAGAAGACA 977 Query 420 AGGCATTTGGCTA 432 ||||||||||||| Sbjct 978 AGGCATTTGGCTA 990 >seq35107 Length=12434 Score = 205 bits (226), Expect = 3e-50 Identities = 145/166 (87%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 |||||| | | ||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 9521 TTCACAGTGCCAGACTAGAGTCATGCTCAACAGGGTCGTCTTTCCGTGCTGATTCCGCCA 9462 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 | || |||| |||||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct 9461 AACCTGTTCTCTTGGCTGTGGTTTCGCTGGATAGTAAGTAGGGACAGTGGGAATCTCATT 9402 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||| | ||||||||| |||| |||||||||||||| Sbjct 9401 CATCCATTCATGCACATCACTAATTGAATGATGAGGCATTTGGCTA 9356 Score = 105 bits (116), Expect = 2e-20 Identities = 90/110 (82%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| |||||| ||| |||||| |||| |||| | ||||||||||||||| ||| Sbjct 9786 GATCTTCTGCTCTGTGGGAAGCTTCTGTCCTCCCTGAG-CTCCCTTAGGACACCTGTGTT 9728 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||| |||| ||| | ||||||| |||||| || |||||||| |||| Sbjct 9727 ATGGTTTGACAGGTGTACTGCCCCAGTCAAACTGCCTACCTGACACTGTC 9678 >seq3881 Length=9694 Score = 145 bits (160), Expect = 2e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 7642 CTTAAGAGAGTAATAGTTACTCCCGCCGTTTACCCACGCTTCATTGAATTTCTTCACTTT 7583 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||| ||||||||||| ||||||| Sbjct 7582 GACATTCAGAGCACTGGGAAGAAATCACATCATGTCAACA 7543 >seq66417 Length=191822 Score = 102 bits (112), Expect = 3e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 19 AGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATG 78 ||||| ||||||| |||| |||| | |||||||| |||||| ||||||||| |||| || Sbjct 75517 AGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGAGACCTGCCTTATGGTTTGACAGGTG 75458 Query 79 TGCCGCCCCAGCCAAACTCCCCACCTGAC 107 | | |||||||||| |||||||||||||| Sbjct 75457 TACTGCCCCAGCCACACTCCCCACCTGAC 75429 >seq65375 Length=25520 Score = 84.2 bits (92), Expect = 7e-14 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAG-TCCCCCTTAGGACACCTGCGTTATG 66 || ||||| || |||| ||||||| |||| || | | || |||||||||||| ||||| Sbjct 17944 TTCTGCTCCACTGGAGGTTTCTGTCCTCCCTGGGCTTGCCTTTAGGACACCTGGATTATG 17885 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 |||| |||| ||| | ||| ||| || ||||| || |||| ||||| ||| Sbjct 17884 GTTTGACAGGTGTACTGCCTCAGGCAGACTCCTCAGCTGATGATGTCCTCA 17834 >seq44169 Length=25845 Score = 77.0 bits (84), Expect = 1e-11 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| |||| || |||| |||| | ||||||||||||||| ||| | Sbjct 18113 CTTCTGCTCCGTGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACG 18172 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACC 103 ||| |||| || ||||||||| ||| |||||| || Sbjct 18173 CTTTGACAGGCGTACCGCCCCAGTCAAGCTCCCCCCC 18209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633497086368