Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq42353 93.3 3e-14 seq63031 91.5 1e-13 seq97605 87.8 1e-12 >seq42353 Length=33545 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| || || | ||| || ||||| || ||||||||||| |||| || || | ||||| Sbjct 28089 TTCAACTCGCCTCATGAAGAGATCGGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCG 28148 Query 66388 TTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 ||||| || | || ||| || || ||||| || |||||||||||||| ||||| Sbjct 28149 CTGCTCTTCTTTCCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCC 28207 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | || |||||||||||||| || ||||| Sbjct 28208 ACGGCTCCAGGTAGATGGCAAA--AGCCC 28234 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| ||| | |||||||||||||| |||||||| || | || | |||||||| Sbjct 24376 TCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGTAATAAATG 24435 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | ||||| || || | || |||| || Sbjct 24436 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCGGGACTTTC-AAAGGGGTACCTCA 24493 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| |||||||| || || || ||||| || ||||||||||| || | Sbjct 24494 TCAAGATGAAAGCATCGGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 24553 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 24554 TGGAGCGT 24561 >seq63031 Length=34312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| ||||| Sbjct 27455 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 27396 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 27395 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 27353 >seq97605 Length=2552 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || ||||||||||| |||||||||||||||||||| ||| | || || || |||||| Sbjct 2546 GAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGTAC 2487 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 2486 AGTCTTCTTATTGACACCTACAT 2464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397063399364240