Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1772 156 2e-35 seq1154 136 2e-29 seq4928 87.8 7e-15 seq17683 80.6 1e-12 >seq1772 Length=69119 Score = 156 bits (172), Expect = 2e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||||| | | Sbjct 49103 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 49044 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 49043 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 48984 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 48983 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 48930 >seq1154 Length=92213 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 2958 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 3017 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | |||| ||||||||| Sbjct 3018 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCCGGGTCTAGGGGCGA 3072 >seq4928 Length=234 Score = 87.8 bits (96), Expect = 7e-15 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138 ||| | | ||||| |||||||| ||| |||||||||||| ||||||| || | || Sbjct 1 AAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGA 60 Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||| ||||||| |||||| | |||||||| || || ||||||| ||| | ||| || | Sbjct 61 AAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAAC 120 Query 199 G 199 | Sbjct 121 G 121 >seq17683 Length=6628760 Score = 80.6 bits (88), Expect = 1e-12 Identities = 71/88 (81%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||||||||||||||| | | |||||||||| | || |||||||||||| Sbjct 5505398 GGACCTGAAAGATGGTGAACTATGTCC--AGAGGGTGAAGCTAAAGAGAACTCTGGTGGA 5505341 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATC 656 || || || ||| ||| | |||||||| Sbjct 5505340 GGTCCGTAGTGGTCCTGACATGCAAATC 5505313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079590905600