Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3263 87.8 3e-15 >seq3263 Length=859018 Score = 87.8 bits (96), Expect = 3e-15 Identities = 126/174 (72%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||||||| | | ||||||||||||||| || | | | | | || ||||| |||| Sbjct 736334 GAATAGGAT-TACAGTTCTATTTTGTTGGGTTTTGGAAATGGTGACATCATTAAGAGGGG 736276 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTATTGAAGA 256 | ||||| | ||||| || || ||||||||||||||||| | | |||| Sbjct 736275 CACCTGGGGGCATTCGTATTG---TGACACTAGAGGTGAAATTCTTGGACTGGTACAAGA 736219 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 | ||||| || ||||| ||||||||| ||||||||||| |||| ||| |||| Sbjct 736218 CGGACTACAGCAAAAGCATTCACCAAGAGTGTTTTCATTAGTCAG-GAATGAAA 736166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915061191616