Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3722 342 9e-92 seq2866 223 6e-56 seq1210 120 5e-25 seq11406 113 8e-23 seq2827 113 8e-23 seq15163 105 1e-20 seq3359 93.3 7e-17 seq1822 89.7 9e-16 >seq3722 Length=12702 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 683 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 624 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 623 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 564 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 563 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 504 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 503 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 444 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 443 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 390 >seq2866 Length=3197266 Score = 223 bits (246), Expect = 6e-56 Identities = 171/203 (84%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||| |||||||||||||||||||||| || |||||||||||||||||||||| | Sbjct 2242663 TCAGCAGCAGGGTAAAACTAACCTGTCTCACAACAGTCTAAACCCAGCTCACGTTCCTTC 2242604 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| |||||||||||||||| | | |||||||| ||| || ||||||||||| || Sbjct 2242603 TTAGCGGGTGAACAATCCAACACCTGGTGAATTCTGTTTCACAATTATAGGAAGAGCTGA 2242544 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||||||||||| ||||| | ||||| |||||| ||||||||||||||||| Sbjct 2242543 CATTAAAGGATCAAAAAGTGACGTCACCGTGAACACTTGGCCACCACAAGCCAGTTATCC 2242484 Query 211 CTGTGGTAACTTTTCTGGCACCT 233 |||||||||| ||| || ||||| Sbjct 2242483 CTGTGGTAACCTTTTTGACACCT 2242461 >seq1210 Length=6914306 Score = 120 bits (132), Expect = 5e-25 Identities = 74/79 (94%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| Sbjct 4103334 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACAGTCTAATCCCAGCTCACATTCCCTA 4103275 Query 91 TTAGTGGGTGAACAATCCA 109 ||||||||||| ||||||| Sbjct 4103274 TTAGTGGGTGAGCAATCCA 4103256 >seq11406 Length=671 Score = 113 bits (124), Expect = 8e-23 Identities = 85/100 (85%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| ||||||| ||| |||||| ||||| ||| |||||||| Sbjct 163 TCATCAGTAGGGTAAAACTAACTTGTCTCACGACAGTCTAATCCCAGTTCATGTTCCCTA 222 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||| |||| ||| |||||||||||| Sbjct 223 TTAGTGGGTGAA-----CAACTCTTGGGGAATTCTGCTTC 257 >seq2827 Length=5943979 Score = 113 bits (124), Expect = 8e-23 Identities = 85/100 (85%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| ||||||| ||| |||||| ||||| ||| |||||||| Sbjct 2654643 TCATCAGTAGGGTAAAACTAACTTGTCTCACGACAGTCTAATCCCAGTTCATGTTCCCTA 2654584 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||| |||| ||| |||||||||||| Sbjct 2654583 TTAGTGGGTGAA-----CAACTCTTGGGGAATTCTGCTTC 2654549 >seq15163 Length=5911245 Score = 105 bits (116), Expect = 1e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| | ||| ||| |||| |||| |||||||| Sbjct 1145404 TCATCAGTAGGGTAAAACTAACCTGTCTCACGT-GGTGTAA-CCCAACTCATGTTCCCTA 1145347 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 ||||||||||||||||||| |||| Sbjct 1145346 TTAGTGGGTGAACAATCCAGTGCTT 1145322 >seq3359 Length=3717629 Score = 93.3 bits (102), Expect = 7e-17 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||||| |||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 3272191 TCTTCAGTATAGTAAAACTAACCTGTCTCATAACAGTCTGAACCCAGCTCACGTTCCCTA 3272132 Query 91 TTAGTG 96 |||||| Sbjct 3272131 TTAGTG 3272126 >seq1822 Length=1484369 Score = 89.7 bits (98), Expect = 9e-16 Identities = 152/218 (70%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||| |||||||||||| | || ||||| | ||| |||||||| ||| ||| | | | Sbjct 1117004 ATCAGGAGGGTAAAACTAGCTTGCCTCATTGCAGTCAAAACCCAGTTCATGTT-CATTGT 1117062 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||| ||||| ||| ||||||||| || | ||| |||| ||| ||| Sbjct 1117063 AATGGGTGAACTGACCAACACTTGGCGAATTCTGTTTTGTGGTGACAGGACAAGCTAACA 1117122 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || |||| | ||| || | |||| | | ||||| || ||| || || Sbjct 1117123 TCAAAGGGT--TGAAGTAATTTTGCTAATA----CTCACTGCCCCAGAGTGGTTTTCTCT 1117176 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||| ||||||||||| || |||| | | |||||| || Sbjct 1117177 GTGATAACTTTTCTGACATCTCTTGTTTAAAATTTAGA 1117214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854270413152