Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2958 210 7e-52 seq3722 111 5e-22 >seq2958 Length=3790395 Score = 210 bits (232), Expect = 7e-52 Identities = 164/196 (84%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||||||||||||| | || |||||| | |||||||||| |||| Sbjct 3060834 CTTCCACTTATTCTACACCTCTTATGTGTCTTCACAGTTCCAAACTAGAGTCATGCTCTG 3060775 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||||||||| ||||| | |||||||||||| ||||||| || | Sbjct 3060774 CAGGGTCTTCTTTCCCTGCTGATTCCACCAAGTCTGTTCCCTTGGCTATGGTTTCACTGG 3060715 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||| ||||||| ||| ||||||| ||| | |||||||||||||| Sbjct 3060714 ATAGTAGGTAGGGACAGTAGGAATCTTGTTCATCCATTTATGAACATCACTAATTAGATG 3060655 Query 417 ACGAGGCATTTGGCTA 432 || | ||||||||||| Sbjct 3060654 ACAAAGCATTTGGCTA 3060639 >seq3722 Length=12702 Score = 111 bits (122), Expect = 5e-22 Identities = 234/357 (66%), Gaps = 59/357 (17%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 356 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 297 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT- 125 ||| |||| ||| ||||||||| ||||||||||||||| | |||| | ||| | Sbjct 296 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGAGCGGGTC 237 Query 126 -----CGGCCCGCGAAGGAC-CTTAACGCCAGAA---AATG-----GTCGGTGAAGACCA 171 |||| |||| || | ||| |||||||| | | |||| | || Sbjct 236 GCGCCCGGCACGCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCC- 178 Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCG 230 |||| ||| | ||||| |||||||||| || ||||||||||||||| || |||| Sbjct 177 CCCCCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCG 118 Query 231 AAAC------------------------------------------GGCTCCCACTTATT 248 || | |||||||||||| Sbjct 117 GGACGCCGGCGCGGCGGGTCGCCCCGCCGCGCCCGGCGCGCGCCCGGCCTCCCACTTATT 58 Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 |||||||||||| ||| |||||| | | ||||||||||||||||||||||||||| Sbjct 57 CTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634951989216