Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13975 96.9 3e-15 seq3519 93.3 3e-14 seq3855 89.7 4e-13 seq13275 82.4 6e-11 >seq13975 Length=2218286 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || |||||||| | || || ||||||||||| |||||||||||||||||||| || Sbjct 1842325 CAAGAAGTGCAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 1842384 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | || || || ||||||||| |||| || || || ||||||| Sbjct 1842385 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATCA 1842427 >seq3519 Length=324677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 166675 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 166616 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| |||||| || ||||||| Sbjct 166615 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAGGT 166557 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 166556 AGATGGCAAA--AGCCC 166542 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||||| ||||||||| |||| |||||||| || | || || |||||||| Sbjct 170458 TCATACGGTCCCTGCTCCTTGGCTAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 170399 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||||||||| | | | | ||| | | ||||| || || | || |||| || Sbjct 170398 GTCTCGAAAATTTGCTGGTTCAAGCGC-TGGGCCTCGGGACTTTC-AAAGGGGTACCTCA 170341 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || ||||| || || || ||||| || ||||||||||| || | Sbjct 170340 TCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 170281 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 170280 TGGAGCGT 170273 >seq3855 Length=16595505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 3215456 TGGCACGTTTTAGCCAGGAGGTGCAGATCCCAGAAGCACGTTGTTTCTATGGCTTTCAGA 3215515 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || || ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 3215516 TTCTTATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 3215572 >seq13275 Length=1050 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||||| ||||||||| |||| |||||||| || | || || |||||||| Sbjct 512 TCATACGGTCCCTGCTCCTTGGCTAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 453 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||||||||| | | | | ||| | | ||||| || || | || |||| || Sbjct 452 GTCTCGAAAATTTGCTGGTTCAAGCGC-TGGGCCTCGGGACTTTC-AAAGGGGTACCTCA 395 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || ||||| || || || ||||| || ||||||||||| || | Sbjct 394 TCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 335 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 334 TGGAGCGT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397494510424880