Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq17777 250 4e-64 seq29248 104 4e-20 seq47666 75.2 2e-11 >seq17777 Length=755 Score = 250 bits (276), Expect = 4e-64 Identities = 207/248 (83%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 610 GTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 552 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 551 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 493 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | ||| |||||| | | |||||||||||||||||||||||||||||||| Sbjct 492 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 433 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||| ||||||||||||||||||| |||||| |||||||||| || Sbjct 432 TCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTCTC 373 Query 251 AATCTGTC 258 ||||| || Sbjct 372 AATCTCTC 365 >seq29248 Length=22896 Score = 104 bits (114), Expect = 4e-20 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| ||||| ||||||||||||||||||||||||||| ||||| ||||| || Sbjct 16832 GTCTTGTTTGTTATTGGAATTAACCAGACAAATCACTCCACC----AAGAATGGCCAGGC 16887 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| || ||| |||||||| | |||||||||| Sbjct 16888 ACCACCACTCACGGAACTGAGAAAGAGTTCTCAATCTGTC 16927 >seq47666 Length=64620 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| || |||||||||||| ||||| |||||||||| |||||||||| Sbjct 33275 CAACTAAGAACGGGCACACACCACCACCCACGGAATCGAGAAAGAGCTCTCAATCTGTC 33333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796339229733