Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02]
59,693 sequences; 1,086,566,339 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq17777 250 4e-64
seq29248 104 4e-20
seq47666 75.2 2e-11
>seq17777
Length=755
Score = 250 bits (276), Expect = 4e-64
Identities = 207/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 610 GTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 552
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133
||| || | |||||| | |||| | |||||||||||||| | | || ||| | |
Sbjct 551 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 493
Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
| | | | ||| |||||| | | ||||||||||||||||||||||||||||||||
Sbjct 492 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 433
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
|| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||
Sbjct 432 TCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTCTC 373
Query 251 AATCTGTC 258
||||| ||
Sbjct 372 AATCTCTC 365
>seq29248
Length=22896
Score = 104 bits (114), Expect = 4e-20
Identities = 83/100 (83%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||| ||| ||||| ||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 16832 GTCTTGTTTGTTATTGGAATTAACCAGACAAATCACTCCACC----AAGAATGGCCAGGC 16887
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| || ||| |||||||| | ||||||||||
Sbjct 16888 ACCACCACTCACGGAACTGAGAAAGAGTTCTCAATCTGTC 16927
>seq47666
Length=64620
Score = 75.2 bits (82), Expect = 2e-11
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||| || |||||||||||| ||||| |||||||||| ||||||||||
Sbjct 33275 CAACTAAGAACGGGCACACACCACCACCCACGGAATCGAGAAAGAGCTCTCAATCTGTC 33333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796339229733
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |