Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq32879 201 4e-49 seq27390 190 7e-46 seq16587 172 2e-40 seq31660 167 8e-39 seq42008 104 8e-20 seq28840 98.7 3e-18 seq39139 86.0 2e-14 seq32100 82.4 2e-13 >seq32879 Length=15481 Score = 201 bits (222), Expect = 4e-49 Identities = 161/194 (83%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||| ||||||||||||||| | ||| |||||| | | |||| |||||| |||||| Sbjct 12673 TCCCATTTATTCTACACCTCTGATGTCTCTTCACAGTGCCAGACTGGAGTCATGCTCAA- 12731 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||| | | ||||||| ||||||| ||||||||||||||||||||||| || Sbjct 12732 ---GTCTTCTTTCTCTGTTGATTCCACCAAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGA 12788 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||| |||||| |||||||||||| || |||||||||||| | || |||| | ||||| Sbjct 12789 CAGTAAGTAGGGATAGTGGGAATCTCATTCATCCATTCATGCACATCGCTAACTGGATGA 12848 Query 418 CGAGGCATTTGGCT 431 ||||||||||||| Sbjct 12849 TGAGGCATTTGGCT 12862 Score = 82.4 bits (90), Expect = 2e-13 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 5 ATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTA 64 ||||| |||| | |||| ||||||| |||| |||| | |||||||||||||| || | Sbjct 12412 ATCTTCTGCTGTGTGGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGTGTCA 12471 Query 65 TGGTTTAACAGATGTGCCGCCCC-AGCCAAACTCCCCACCTGACA 108 ||||| |||| ||| | ||||| || |||| ||| |||||||| Sbjct 12472 CGGTTTGACAGGTGTACTGCCCCAAGTCAAATGCCCAACCTGACA 12516 >seq27390 Length=76697 Score = 190 bits (210), Expect = 7e-46 Identities = 132/150 (88%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||| ||||| ||||||||||||||||| ||||||| |||||||||||| ||| || Sbjct 50390 AGAGTCAGGCTCACCAGGGTCTTCTTTCCCCACTGATTCTACCAAGCCCGTTCTCTTTGC 50449 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 | ||||||| || |||||||| | ||||||||||| |||||||| |||||||| ||| || Sbjct 50450 TTTGGTTTCACTGGATAGTAGGTGGGGACAGTGGGCATCTCGTTCATCCATTCGTGCACG 50509 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||| |||| ||||||||||||| Sbjct 50510 TCACTAATTAGGTGACAAGGCATTTGGCTA 50539 >seq16587 Length=2249 Score = 172 bits (190), Expect = 2e-40 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||| |||||||||||||||||||| ||||||||||| | |||||| ||||||||||| Sbjct 1 TGATTCTGCCAAGCCCGTTCCCTTGGCGGTGGTTTCGCTGG-TAGTAGGTAGGGACAGTG 59 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||| || |||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 GGAATCTCATTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGTTA 116 Score = 161 bits (178), Expect = 3e-37 Identities = 95/99 (96%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 1942 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTTCATTGAATTTCTTCACTTTG 2001 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||||||| Sbjct 2002 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 2040 >seq31660 Length=14276 Score = 167 bits (184), Expect = 8e-39 Identities = 123/144 (85%), Gaps = 7/144 (5%) Strand=Plus/Minus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 || ||||||||| |||||||||| || |||||| ||||||| |||||||| || Sbjct 9072 AACCTCAACAGGACCTTCTTTCCCTGCGGATTCCACCAAGCC-------TTGGCTGTAGT 9020 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||| || ||||| ||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 9019 TTCACTGGATAGAAGATAGGGACAGTGGGAATCTCGTTCATCCATTCATGCATGTCACTA 8960 Query 409 ATTAGATGACGAGGCATTTGGCTA 432 |||||||||| ||||||||||||| Sbjct 8959 ATTAGATGACAAGGCATTTGGCTA 8936 >seq42008 Length=25164 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 576 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 635 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||||||||| | |||| Sbjct 636 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGCCGCTGTC 682 >seq28840 Length=113618 Score = 98.7 bits (108), Expect = 3e-18 Identities = 95/122 (78%), Gaps = 5/122 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | ||| |||||| ||||||| |||| |||| | |||||||| | |||| ||||| Sbjct 86752 CTTCTCCTCCGCAGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGAGATCTGCCTTATG 86693 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| || | ||||||||||||||||||||| || |||| |||||||| Sbjct 86692 GTTTGACAGGCGTACTGCCCCAGCCAAACTCCCCACCCGATGCTGTC-----CCCGGATC 86638 Query 127 GG 128 || Sbjct 86637 GG 86636 >seq39139 Length=19593 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 3496 TTGAGTTTCTTCACTTTGAGATTCAGAGCACTGGGCAGAAGTCACATTGTGTCAACA 3552 >seq32100 Length=66156 Score = 82.4 bits (90), Expect = 2e-13 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| |||| |||| || |||| |||| |||| | |||||||| ||| Sbjct 37669 CTTCTGCTCTACGGGAGGTTTCCGTCCTCCCTGAGCTTGCCTTTGTACACCTGCATTAAC 37610 Query 67 G-TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||||||||||||| ||||||| ||||||| Sbjct 37609 ACTTTGACAGGTGTGCCGCCCCAGTCAAACTCGCCACCTG 37570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634223900064