Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02]
59,693 sequences; 1,086,566,339 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq32879 201 4e-49
seq27390 190 7e-46
seq16587 172 2e-40
seq31660 167 8e-39
seq42008 104 8e-20
seq28840 98.7 3e-18
seq39139 86.0 2e-14
seq32100 82.4 2e-13
>seq32879
Length=15481
Score = 201 bits (222), Expect = 4e-49
Identities = 161/194 (83%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
||||| ||||||||||||||| | ||| |||||| | | |||| |||||| ||||||
Sbjct 12673 TCCCATTTATTCTACACCTCTGATGTCTCTTCACAGTGCCAGACTGGAGTCATGCTCAA- 12731
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|||||||||| | | ||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 12732 ---GTCTTCTTTCTCTGTTGATTCCACCAAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGA 12788
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
|||| |||||| |||||||||||| || |||||||||||| | || |||| | |||||
Sbjct 12789 CAGTAAGTAGGGATAGTGGGAATCTCATTCATCCATTCATGCACATCGCTAACTGGATGA 12848
Query 418 CGAGGCATTTGGCT 431
|||||||||||||
Sbjct 12849 TGAGGCATTTGGCT 12862
Score = 82.4 bits (90), Expect = 2e-13
Identities = 82/105 (78%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 5 ATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTA 64
||||| |||| | |||| ||||||| |||| |||| | |||||||||||||| || |
Sbjct 12412 ATCTTCTGCTGTGTGGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGTGTCA 12471
Query 65 TGGTTTAACAGATGTGCCGCCCC-AGCCAAACTCCCCACCTGACA 108
||||| |||| ||| | ||||| || |||| ||| ||||||||
Sbjct 12472 CGGTTTGACAGGTGTACTGCCCCAAGTCAAATGCCCAACCTGACA 12516
>seq27390
Length=76697
Score = 190 bits (210), Expect = 7e-46
Identities = 132/150 (88%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342
||||||| ||||| ||||||||||||||||| ||||||| |||||||||||| ||| ||
Sbjct 50390 AGAGTCAGGCTCACCAGGGTCTTCTTTCCCCACTGATTCTACCAAGCCCGTTCTCTTTGC 50449
Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402
| ||||||| || |||||||| | ||||||||||| |||||||| |||||||| ||| ||
Sbjct 50450 TTTGGTTTCACTGGATAGTAGGTGGGGACAGTGGGCATCTCGTTCATCCATTCGTGCACG 50509
Query 403 TCACTAATTAGATGACGAGGCATTTGGCTA 432
||||||||||| |||| |||||||||||||
Sbjct 50510 TCACTAATTAGGTGACAAGGCATTTGGCTA 50539
>seq16587
Length=2249
Score = 172 bits (190), Expect = 2e-40
Identities = 109/117 (93%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375
|||||| |||||||||||||||||||| ||||||||||| | |||||| |||||||||||
Sbjct 1 TGATTCTGCCAAGCCCGTTCCCTTGGCGGTGGTTTCGCTGG-TAGTAGGTAGGGACAGTG 59
Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 GGAATCTCATTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGTTA 116
Score = 161 bits (178), Expect = 3e-37
Identities = 95/99 (96%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1942 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTTCATTGAATTTCTTCACTTTG 2001
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||| |||||||||
Sbjct 2002 ACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 2040
>seq31660
Length=14276
Score = 167 bits (184), Expect = 8e-39
Identities = 123/144 (85%), Gaps = 7/144 (5%)
Strand=Plus/Minus
Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348
|| ||||||||| |||||||||| || |||||| ||||||| |||||||| ||
Sbjct 9072 AACCTCAACAGGACCTTCTTTCCCTGCGGATTCCACCAAGCC-------TTGGCTGTAGT 9020
Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408
||| || ||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 9019 TTCACTGGATAGAAGATAGGGACAGTGGGAATCTCGTTCATCCATTCATGCATGTCACTA 8960
Query 409 ATTAGATGACGAGGCATTTGGCTA 432
|||||||||| |||||||||||||
Sbjct 8959 ATTAGATGACAAGGCATTTGGCTA 8936
>seq42008
Length=25164
Score = 104 bits (114), Expect = 8e-20
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| |
Sbjct 576 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 635
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| |||| ||| || |||||| ||||||||||||||| | ||||
Sbjct 636 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGCCGCTGTC 682
>seq28840
Length=113618
Score = 98.7 bits (108), Expect = 3e-18
Identities = 95/122 (78%), Gaps = 5/122 (4%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| | ||| |||||| ||||||| |||| |||| | |||||||| | |||| |||||
Sbjct 86752 CTTCTCCTCCGCAGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGAGATCTGCCTTATG 86693
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||| || | ||||||||||||||||||||| || |||| ||||||||
Sbjct 86692 GTTTGACAGGCGTACTGCCCCAGCCAAACTCCCCACCCGATGCTGTC-----CCCGGATC 86638
Query 127 GG 128
||
Sbjct 86637 GG 86636
>seq39139
Length=19593
Score = 86.0 bits (94), Expect = 2e-14
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 3496 TTGAGTTTCTTCACTTTGAGATTCAGAGCACTGGGCAGAAGTCACATTGTGTCAACA 3552
>seq32100
Length=66156
Score = 82.4 bits (90), Expect = 2e-13
Identities = 79/100 (79%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| |||||||| |||| |||| || |||| |||| |||| | |||||||| |||
Sbjct 37669 CTTCTGCTCTACGGGAGGTTTCCGTCCTCCCTGAGCTTGCCTTTGTACACCTGCATTAAC 37610
Query 67 G-TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105
||| |||| ||||||||||||| ||||||| |||||||
Sbjct 37609 ACTTTGACAGGTGTGCCGCCCCAGTCAAACTCGCCACCTG 37570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634223900064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |