Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq42616 86.0 1e-14 seq28732 73.4 6e-11 >seq42616 Length=21112 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| | ||| |||| || |||| || || | Sbjct 20682 GTACGAGAGGAACCGCAGA-TTCAGACCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 20739 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || || |||||||||||| || ||||| |||||| ||| ||||||||||||| Sbjct 20740 GGCGTGAGGCTACCATCTGCGGGCTTATGACTGAACACCTTTAAGTCAGAATCC 20793 >seq28732 Length=16530 Score = 73.4 bits (80), Expect = 6e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || ||||| |||||| ||||| || ||||| |||||| ||||||| Sbjct 3037 TGGCTGAGGAGCCACTGGCGCGAGGCTACCGTCTGCGGGCTTATGACTGAACACCTCTAA 3096 Query 105 GTCAGAATCCATGCC 119 |||||||||| |||| Sbjct 3097 GTCAGAATCC-TGCC 3110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818726276352