Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydotis_20macqueenii_20[refseq_20GCF_5F000695195.1_202014-06-02] 59,693 sequences; 1,086,566,339 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2877 129 5e-25 seq13104 98.7 8e-16 seq24783 91.5 1e-13 >seq2877 Length=20153 Score = 129 bits (142), Expect = 5e-25 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 9510 GGTGTACTCCACGATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 9451 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 9450 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCCGTCTG 9391 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||||||||| |||| || ||||| || | ||||||||| Sbjct 9390 AGACTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 9351 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 7842 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCCTT 7783 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || ||| || ||||| || |||||||||||||| ||||| || |||||||| Sbjct 7782 CCCAGTATTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGTA 7723 Query 66460 GATGGCGAACGAGCCC 66475 |||||| || ||||| Sbjct 7722 GATGGCAAA--AGCCC 7709 >seq13104 Length=28606 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| || | || || ||||||||||| ||||| |||| Sbjct 21715 TGGCACGTTTTAGTCAGGAGGTGCAGGTCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 21656 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 21655 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 21599 >seq24783 Length=9331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 835 TGGAGCGCTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 894 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| ||| | || || || ||||||||| |||| || || || ||||| Sbjct 895 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397278765925520