Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq191736 125 6e-24 seq109713 91.5 1e-13 seq50110 91.5 1e-13 seq45188 86.0 5e-12 >seq191736 Length=12127 Score = 125 bits (138), Expect = 6e-24 Identities = 127/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 1964 GGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 2023 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 2024 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCTGTCTG 2083 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || || ||||| |||| || ||||| || | ||||||||| Sbjct 2084 AGATTCGATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 2123 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 3310 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 3369 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 3370 TCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 3428 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 3429 AGATGGCAAA--AGCCC 3443 >seq109713 Length=16520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | || || ||||||||||| |||||||||| Sbjct 1209 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 1268 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| ||| | || || || ||||||||| |||| || || || ||||| Sbjct 1269 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 1323 >seq50110 Length=15533 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| ||||| Sbjct 7745 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 7686 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 7685 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 7643 >seq45188 Length=12499 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 || ||| ||| | |||||||||||||| |||||||| || | || || |||||||| Sbjct 11985 TCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 12044 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | |||||| || || | || |||| || Sbjct 12045 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCAGGACTTTC-AAAGGGGTACCTCA 12102 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| || ||||| || || || |||||||| ||||||||||| || | Sbjct 12103 TCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATACCAATGGGACGATGGCGTCTGT 12162 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 12163 TGGAGCGT 12170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395119062994160