Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq265 163 4e-38 seq770 102 1e-19 seq738 84.2 3e-14 >seq265 Length=869584 Score = 163 bits (180), Expect = 4e-38 Identities = 148/184 (80%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||| ||||||| ||||| || ||| ||| | ||| |||| ||||||| ||| ||| Sbjct 229653 ACAAGGGGCAGGAACGTAATCGGCGCATGCT-GTCCACTTGCGCCTACTAGGTATT-CCT 229710 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACC 122 || |||||| || ||||||||| |||||||||||||||| || | |||||||||||| Sbjct 229711 CGATGAAGATTAATAATTGCAATAATCTATCCCCATCACGGTGCATACTCAAAGATTACC 229770 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 |||||| |||||||||| || |||||||| || ||| |||||||||||||||| ||| Sbjct 229771 TAGACCTGCCGGCCAAGGTTGTAAACTCGTTGGATGCATTAGTGTAGCGCGCGTGCAGCC 229830 Query 183 CAGA 186 | || Sbjct 229831 CGGA 229834 >seq770 Length=96880 Score = 102 bits (112), Expect = 1e-19 Identities = 164/232 (71%), Gaps = 13/232 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| ||||||||||| ||| | || ||| | | || ||||||| ||| | Sbjct 43693 GTACGAAGGGCAGGGAAGTAACCGGCGGGAGTT---------GTGCCTACTAGGCATT-C 43644 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||| ||| | || | || |||| ||||||| |||||| |||| | | | ||| Sbjct 43643 GTCGTGGAATATTAAAATTTACAATAATCTATCTCCATCATGATGTCTACTGAGGAAATT 43584 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | |||||||||||||||| | | |||| ||| | | ||||||| |||||||| Sbjct 43583 GCGTAGACCTGTCGGCCAAGGCAAAA-ACTCCTTGGAGGTACTAGTGTAGTGCGCGTGCC 43525 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||| |||||||||| ||||||| ||||||||||| ||||| |||| || Sbjct 43524 CCCC-GAACATCTAAAAGCATCACGCGCCTGTTATTGCATCAAATTTCCTTG 43474 >seq738 Length=102476 Score = 84.2 bits (92), Expect = 3e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 || ||||| |||||| ||||||||||| | ||| |||||| ||||| |||||||| |||| Sbjct 93290 TGGATACACCAGTGTTGCGCGCGTGCGACTCAGGACATCTGAGGGCCTCACAGACGTGTT 93231 Query 213 ATTGCCTCAAA 223 |||||||||| Sbjct 93230 CTTGCCTCAAA 93220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751691341835