Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2628 125 1e-26 seq208 73.4 7e-11 >seq2628 Length=32676 Score = 125 bits (138), Expect = 1e-26 Identities = 167/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 87 AATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAA-TACATTAGCATGGAATAATAGAATA 144 |||||||| ||| |||||||| | |||| | || ||| | ||| |||||| ||| Sbjct 15275 AATTAGAGCGTTTCAAGCAGGCTTGTTGCCCTAAATACTTCAGCGCAGAATAACCAGATA 15216 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTC 204 ||| | | || ||||||||||||| |||||||| | ||| ||||| | ||||| |||| Sbjct 15215 GGATTT-CAGTCCTATTTTGTTGGTGTCTAGGACTGAAGTAGTGATTGACAGGGACAGTC 15157 Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTAC 264 | ||| | ||| | | ||||||||||||||||| | | || || | ||| |||||| Sbjct 15156 GAGGGCATTCGTACTACACTGTCAGAGGTGAAATTCATAGGTTAGTTAAGGACGAACTAC 15097 Query 265 TGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||||||| | ||| ||||| | | ||| ||| |||||||| Sbjct 15096 TGCGAAAGCACTTGTCAAAGATGTGTCCGTTAGTCA-ACAACGAAAG 15051 >seq208 Length=1344296 Score = 73.4 bits (80), Expect = 7e-11 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 233 TGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTC 292 ||||||| | ||| | || ||||| ||||||||||||||| || || | || | |||| Sbjct 77104 TGAAATTTCTAGATATCTTAAAGACGAACTACTGCGAAAGCATTTGCCGACGACGCTTTC 77163 Query 293 ATTAATCAGTGAACGAAAGTTAGGG 317 |||||||| |||||| |||||||| Sbjct 77164 ATTAATCA-CGAACGACAGTTAGGG 77187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914812238912