Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value SEQ24999 178 5e-42 seq651 114 5e-23 seq30 80.6 1e-12 >SEQ24999 Length=2194 Score = 178 bits (196), Expect = 5e-42 Identities = 213/287 (74%), Gaps = 17/287 (6%) Strand=Plus/Plus Query 382 GATGCTGGCGTAAT-GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||| ||| |||| || || ||||||||| ||||||||||||||||||||||| Sbjct 1909 GATGCTGGCTTAAACGGTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 1968 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGA----ACGGAGGTG 496 | | ||| ||| | ||||| |||||| || ||| ||||||||||| | ||| | | Sbjct 1969 TATGTGCAAGTATGCGGGTGGCAAACCTGTATGCGAAATGAAAGTGAGAGTAGGGAAGAG 2028 Query 497 GGAACCCGT----GAGGGT-------GCACCATCGACCGATCCTGATGTCTTCGGATGGA 545 | | | | || | | ||||| ||||||| | ||| || | || Sbjct 2029 AGTAACATTTCACGATGTTATGCTTTGCACCTACGACCGACCACGATCTCAGAGAGAGG- 2087 Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| || Sbjct 2088 TTTGAGTTGGAGCATATCTGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGTAGAATG 2147 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCA 652 ||| ||| |||||| ||| |||||| ||| |||| | ||| |||||| Sbjct 2148 AAGTCAGGGGAAACCCTGATGGAGGTTCGTAGCGATACTGACGTGCA 2194 Score = 152 bits (168), Expect = 2e-34 Identities = 136/169 (80%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| | |||| | ||| | ||||| | ||||| |||| ||||||||||| Sbjct 1466 GAGTCGCGTTCATCGGGATTTGAGCGCAAAATGTGTGGTAAGTTTCACATAAAGCTAAAT 1525 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||||| Sbjct 1526 ATTGGCGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGTTCTTTGGAA 1585 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC 208 |||||||| ||||| | |||||||| |||| ||||||| ||| |||| Sbjct 1586 AGAGAGTT-AAAAGTGCCTGAAATTGCCGAAAAGGAAGCGATTGGAACC 1633 >seq651 Length=123438 Score = 114 bits (126), Expect = 5e-23 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 ||| ||||||| ||||| ||||||||||| || ||| ||||||||| ||| || || | Sbjct 29406 GTAGGAGCATACCTGTTAGGACCCGAAAGGTGATGAGCTATGCCTGGGTAGAATGTAGTC 29347 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 || |||||| ||| || || ||| || | ||| ||||||||||| |||||||| ||| Sbjct 29346 AGGGGAAACCCTGAAGGGGGTTCGTAGTGACCCTGACGTGCAAATCGTTCGTCAAACTTG 29287 Query 671 GGTATAGGGGCGA 683 | |||||||||| Sbjct 29286 CGAATAGGGGCGA 29274 >seq30 Length=5416276 Score = 80.6 bits (88), Expect = 1e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||||||||| |||| |||||||||||||||||||||||||| || |||||| Sbjct 933977 GTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTC 933918 Query 643 CTGGCGT 649 ||| ||| Sbjct 933917 CTGACGT 933911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079091184950