Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2285 109 2e-21 seq545 86.0 2e-14 seq2256 78.8 3e-12 >seq2285 Length=36578 Score = 109 bits (120), Expect = 2e-21 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19 ACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCA 78 |||| ||||||||||||||| | || |||||||||||||||||||||||||||||| | | Sbjct 17087 ACTCCAAGGAATTGACGGGGGCTCGTACAAGCGGTGGAGCATGTGGTTTAATTCGATGTA 17028 Query 79 ACGCGAAGAACCTTACCA 96 ||||||| |||||||||| Sbjct 17027 ACGCGAAAAACCTTACCA 17010 >seq545 Length=169445 Score = 86.0 bits (94), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| | |||||||| |||| |||| |||||||||||||||||||| || Sbjct 51911 ACAGGTGGTGCATGGCTATCGTCAGCGCGTG-CGTGGGATGTTGGGTTAAGTCCCGCTAC 51853 Query 216 GAGCGCAACCCT 227 |||||| || || Sbjct 51852 GAGCGCTACACT 51841 >seq2256 Length=36817 Score = 78.8 bits (86), Expect = 3e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 29 ATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAA 88 |||||||||| | || |||||||||||| ||||||||||||||||| | |||||||| || Sbjct 30944 ATTGACGGGGGCTCGTACAAGCGGTGGAACATGTGGTTTAATTCGATGTAACGCGAAAAA 30885 Query 89 CCT 91 || Sbjct 30884 ACT 30882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503362770240