Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq770 170 3e-40 seq265 154 2e-35 SEQ12784 131 3e-28 seq53 107 3e-21 seq648 89.7 8e-16 seq738 78.8 1e-12 >seq770 Length=96880 Score = 170 bits (188), Expect = 3e-40 Identities = 191/248 (77%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||||| |||||||| ||| |||||||||| ||||||| ||||||||||| |||| Sbjct 43541 AGTGTAGTGCGCGTGCCCCCC-GAACATCTAAAAGCATCACGCGCCTGTTATTGCATCAA 43483 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA--ACCATAG-TC 134 | |||| | | | || || | || ||||| |||||| | ||| | || || | Sbjct 43482 ATTTCCTTGCGTTAGACGCGCAGCGTACCTCTGAGAAGCGA--CACTAGGACTCGAGGTT 43425 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAT---CGGAATTAACCAGACAAAT 191 || || ||||||| || |||||||||| |||| || |||| ||||||||||| Sbjct 43424 CTTGATCCTGCTTAGCAGATTCAGGTCTCGTT--TTATTGACGAAATTGACCAGACAAAT 43367 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC-AAGAAAGAGCTATC 250 ||| |||| || || |||||||| ||||||||||||| ||||||| |||||||||||||| Sbjct 43366 CACACCACTAAATAGGAACGGCCGTGCACCACCACCCTTAGAATCAAAGAAAGAGCTATC 43307 Query 251 AATCTGTC 258 |||||||| Sbjct 43306 AATCTGTC 43299 >seq265 Length=869584 Score = 154 bits (170), Expect = 2e-35 Identities = 105/117 (90%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| ||||||| |||||||||| || | | |||||||||| ||||||||||| Sbjct 229622 CTATTTAGCAAATTAAGGT-TCGTTCGTTAACGTAGTAAACCAGACAAGTCACTCCACCA 229564 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 229563 ACTAAAAACGGCCATGCACCACCACCTGTAGAAACAAGAAAGAGCTATCAATCTGTC 229507 >SEQ12784 Length=8000 Score = 131 bits (144), Expect = 3e-28 Identities = 95/110 (86%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 |||||| || ||||||||| || |||||| |||||||||||||| |||||| |||| Sbjct 7548 TAGCAGACGAACATCTCGTTCGCTAACGGAATCAACCAGACAAATCATTCCACCGCCTAA 7489 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 || ||||||||||||||||||| |||||| ||||||||||||||| |||| Sbjct 7488 GAGCGGCCATGCACCACCACCCGTAGAATGAAGAAAGAGCTATCAGTCTG 7439 >seq53 Length=4381879 Score = 107 bits (118), Expect = 3e-21 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| || ||||||||||| ||| ||||||||||||||||| ||||||||||| |||| Sbjct 3485626 TTATGAGAGTTAACCAGACAGATCGCTCCACCAACTAAGAACAACCATGCACCACTACCC 3485685 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGT 257 | |||||||| |||||||| ||| ||||| Sbjct 3485686 ACAGAATCAAAAAAGAGCTCTCAGTCTGT 3485714 >seq648 Length=124313 Score = 89.7 bits (98), Expect = 8e-16 Identities = 133/184 (72%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 44 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAATAG 102 |||| ||||||| |||||||||| | || | | | ||| |||||| | |||| | | Sbjct 101003 ATCTCAGGGCATTACAGACCTGTGA---CCACTTAATCCCAGATGGCTGAATGCCACTTG 100947 Query 103 TCCCTCTAAGAAGCCAGCCACCAAC----CATAGT-CGATGGGGCTATTTAGCAGGTTAA 157 ||||||||||||| | || || | || ||| | ||| ||| ||| || | | Sbjct 100946 TCCCTCTAAGAAGGTGGACATCACCTGCTCA-AGTGCCATGTAACTAATTATCATGCCAG 100888 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 | || | | |||| |||||||||||||||| | |||||||||||||||| ||||||| Sbjct 100887 AGACTTGGGCATTATTGGAATTAACCAGACAAGTAGCTCCACCAACTAAGAATGGCCATG 100828 Query 218 CACC 221 ||| Sbjct 100827 AACC 100824 >seq738 Length=102476 Score = 78.8 bits (86), Expect = 1e-12 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||| ||||||||||| | ||| |||||| ||||| |||||||| |||| |||||||| Sbjct 93281 CAGTGTTGCGCGCGTGCGACTCAGGACATCTGAGGGCCTCACAGACGTGTTCTTGCCTCA 93222 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC 117 || || | | | || | || ||| | |||||||||| Sbjct 93221 AATGTCTGTACGGTAGACACAAAGAGTTGCCCTAAGAAGCC 93181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796472953689