Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq5530 109 9e-22 seq291 95.1 2e-17 >seq5530 Length=17987 Score = 109 bits (120), Expect = 9e-22 Identities = 105/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT-TTCCTACGCCCACGACGGATAGGGA 167 |||||||||||||||||| | | || | ||| ||| |||| || |||||| ||| Sbjct 14267 GGTCCTCTCGTACTAAGGGAAA-TACTGTACAATATTCTTACGTTTACATCGGATACGGA 14325 Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| ||| Sbjct 14326 CCGAACTGACTCAAGACGTTCTGAACCCAGCTCACGTGCAGCTTTAATGGGCGACCAGAT 14385 Query 228 CAACCCTTGGGA 239 ||| ||||| || Sbjct 14386 CAATCCTTGAGA 14397 >seq291 Length=651168 Score = 95.1 bits (104), Expect = 2e-17 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||||||||||||||||| |||||||||| ||||| || ||||| ||||||| ||||| Sbjct 17215 CCGCTTTAATGGGCGAACAGACCAACCCTTGAGACCTGCTACAGCCTCAGGATGCGACGA 17274 Query 266 GCCGACATCG 275 |||||||||| Sbjct 17275 GCCGACATCG 17284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780479520884