Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13]
42,369 sequences; 1,254,146,751 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq265 150 3e-34
seq770 96.9 7e-18
seq738 77.0 6e-12
>seq265
Length=869584
Score = 150 bits (166), Expect = 3e-34
Identities = 144/183 (79%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204
|| |||| |||||||||||||||| | | |||||||||| | ||||||||||| |||
Sbjct 229834 TCCGGGCTGCACGCGCGCTACACTAATGCATCCAACGAGTTTACAACCTTGGCCGGCAGG 229775
Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264
||| ||||||||| | | | |||| |||||||||| |||||||||||| ||||
Sbjct 229774 TCTAGGTAATCTT-TGAGTATGCACCGTGATGGGGATAGATTATTGCAATTATTAATCTT 229716
Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324
|| |||||||| ||||||| |||| || ||||| ||| |||||||| ||||||| |
Sbjct 229715 CATCGAGGAATACCTAGTAGGCGCAAGTGGACAGCATGCGCCGATTACGTTCCTGCCCCT 229656
Query 325 TGT 327
|||
Sbjct 229655 TGT 229653
>seq770
Length=96880
Score = 96.9 bits (106), Expect = 7e-18
Identities = 181/262 (69%), Gaps = 17/262 (6%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||| ||||| || | || || | | | |||| ||||| ||||||||||| ||
Sbjct 43444 GCTTCTCAGAGGTACGCTGCGCGTCTAACGCAAGGAAATTTGATGCAATAACAGGCGCGT 43503
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||| |||||||||| ||| |||||||| ||||||| | |||| ||||| |
Sbjct 43504 GATGCTTTTAGATGTTC-GGGGGGCACGCGCACTACACTAGTACCTCCAAGGAGTT-TTT 43561
Query 190 ACCTTGGCCGGAAGGTCTGGGTAAT---CTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246
||||||||| |||||| | ||| || || || || || ||| ||||||
Sbjct 43562 GCCTTGGCCGACAGGTCTACGCAATTTCCTCAGTAGAC---ATCATGATGGAGATAGATT 43618
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
|||| || | || | ||| |||| |||||||||||| || || | | ||
Sbjct 43619 ATTGTAAATTTTAATATTCCACGACGAATGCCTAGTAGGC--------ACAACTCCCGCC 43670
Query 307 GATTACGTCCCTGCCCTTTGTA 328
| |||| ||||||||||| |||
Sbjct 43671 GGTTACTTCCCTGCCCTTCGTA 43692
>seq738
Length=102476
Score = 77.0 bits (84), Expect = 6e-12
Identities = 54/62 (87%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167
|||||||||| |||| |||||||| ||||| |||||| ||| | ||||||||||| ||||
Sbjct 93220 TTTGAGGCAAGAACACGTCTGTGAGGCCCTCAGATGTCCTGAGTCGCACGCGCGCAACAC 93279
Query 168 TG 169
||
Sbjct 93280 TG 93281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946798680832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |