Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq265 150 3e-34 seq770 96.9 7e-18 seq738 77.0 6e-12 >seq265 Length=869584 Score = 150 bits (166), Expect = 3e-34 Identities = 144/183 (79%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 145 TCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGG 204 || |||| |||||||||||||||| | | |||||||||| | ||||||||||| ||| Sbjct 229834 TCCGGGCTGCACGCGCGCTACACTAATGCATCCAACGAGTTTACAACCTTGGCCGGCAGG 229775 Query 205 TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 ||| ||||||||| | | | |||| |||||||||| |||||||||||| |||| Sbjct 229774 TCTAGGTAATCTT-TGAGTATGCACCGTGATGGGGATAGATTATTGCAATTATTAATCTT 229716 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || |||||||| ||||||| |||| || ||||| ||| |||||||| ||||||| | Sbjct 229715 CATCGAGGAATACCTAGTAGGCGCAAGTGGACAGCATGCGCCGATTACGTTCCTGCCCCT 229656 Query 325 TGT 327 ||| Sbjct 229655 TGT 229653 >seq770 Length=96880 Score = 96.9 bits (106), Expect = 7e-18 Identities = 181/262 (69%), Gaps = 17/262 (6%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||| ||||| || | || || | | | |||| ||||| ||||||||||| || Sbjct 43444 GCTTCTCAGAGGTACGCTGCGCGTCTAACGCAAGGAAATTTGATGCAATAACAGGCGCGT 43503 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||| |||||||||| ||| |||||||| ||||||| | |||| ||||| | Sbjct 43504 GATGCTTTTAGATGTTC-GGGGGGCACGCGCACTACACTAGTACCTCCAAGGAGTT-TTT 43561 Query 190 ACCTTGGCCGGAAGGTCTGGGTAAT---CTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 ||||||||| |||||| | ||| || || || || || ||| |||||| Sbjct 43562 GCCTTGGCCGACAGGTCTACGCAATTTCCTCAGTAGAC---ATCATGATGGAGATAGATT 43618 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||| || | || | ||| |||| |||||||||||| || || | | || Sbjct 43619 ATTGTAAATTTTAATATTCCACGACGAATGCCTAGTAGGC--------ACAACTCCCGCC 43670 Query 307 GATTACGTCCCTGCCCTTTGTA 328 | |||| ||||||||||| ||| Sbjct 43671 GGTTACTTCCCTGCCCTTCGTA 43692 >seq738 Length=102476 Score = 77.0 bits (84), Expect = 6e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167 |||||||||| |||| |||||||| ||||| |||||| ||| | ||||||||||| |||| Sbjct 93220 TTTGAGGCAAGAACACGTCTGTGAGGCCCTCAGATGTCCTGAGTCGCACGCGCGCAACAC 93279 Query 168 TG 169 || Sbjct 93280 TG 93281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946798680832