Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3072 453 4e-125 seq397 168 2e-39 seq5121 113 1e-22 seq387 104 8e-20 seq7935 95.1 4e-17 seq490 95.1 4e-17 seq476 93.3 1e-16 seq53 84.2 7e-14 seq44 82.4 2e-13 >seq3072 Length=28870 Score = 453 bits (502), Expect = 4e-125 Identities = 427/536 (80%), Gaps = 20/536 (4%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 |||| || ||| |||||| |||||||| || | ||||||||||||| || ||| || Sbjct 8043 TTTGGTCGACATGAGATTCCTGTTCTCATTGTGCTTGCCTTAGGACACCTTCGCTATTGT 8102 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 || ||||||||||||||||| |||||||||| | || ||||| || | |||| | Sbjct 8103 TTCACAGATGTGCCGCCCCAACCAAACTCCCAATCT----ATGTCTTCCGCGTAGATCAG 8158 Query 129 CC-CGCGAAGG--ACCTTAACGCCAGAAAA--TGGTCGGTGAAGACCAGTTCCGCTTCAT 183 | | || | ||||||| ||| || | || | | | | | || | | | Sbjct 8159 CGGCATAAATGCCACCTTAAATCCAAAACACATGCTTGCGCATGCGCC--TCAACATGAC 8216 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || |||||||| ||| |||| ||||||||||||||| |||||||| ||| || Sbjct 8217 GGAAGAAGTAAAACAACATTAAGAGTAGTGGTATTTCACGA-CGCCGAAAAAT-TCCTAC 8274 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||||||||||||| ||||||||||||| |||||||||| |||||||||||||| | || Sbjct 8275 TTATTCTACACCTCCTAAGTCATTTCACAGAGTCGGACTACAGTCAAGCTCAACACGATC 8334 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||| ||||||| ||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 8335 TTC----CCCGCTGCTTCTGTCAAGCCCGCTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 8390 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||| Sbjct 8391 ATAGGGGCAGTGGGAATCTCGTTAATC---TCATGCGTGTCACTAATCAGATGACGAGGC 8447 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 | |||||||||||| ||||||||| | |||| ||||||||||||||||||| ||||||| Sbjct 8448 AATTGGCTACCTTATGAGAGTCATCGCTACTTTCGCCGTTTACCCGCGCTTGATTGAATT 8507 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 || ||| |||||||||| || |||||||||||||||||||| ||||||| || || Sbjct 8508 TCACCACATTGACATTCAAAGAACTGGGCAGAAATCACATTGTGTCAACACCAGTT 8563 >seq397 Length=311530 Score = 168 bits (186), Expect = 2e-39 Identities = 125/144 (87%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| || ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||| Sbjct 129297 AGACAGAGACAGTGGGAAGCTCGTTAATCCATTGATGCGTGTCACTAACTAGATGACGAG 129238 Query 422 GCATTTGGCTACCTTAAGAGAGTC--ATAGTTACTCCCGCCGTTTACCCGCGC-TTGGTT 478 |||| | ||||| ||||||||||| ||||||||| ||||| | ||||||||| ||| || Sbjct 129237 GCATCTTGCTACTTTAAGAGAGTCGTATAGTTACTTCCGCCATCTACCCGCGCTTTGATT 129178 Query 479 GAATTTCTTCACTTTGACATTCAG 502 ||||||| |||| |||| |||||| Sbjct 129177 GAATTTCATCACATTGAGATTCAG 129154 >seq5121 Length=19151 Score = 113 bits (124), Expect = 1e-22 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 ||||||| || || ||| |||||| | |||||||||||||||||| | |||||| Sbjct 18368 TTCATGCATTTCCCTGATTGGATGACAAAATGTTTGGCTACCTTAAGAGAATTGTAGTTA 18309 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||| |||| || | | ||||| ||||||||||||| |||||| ||||||||| Sbjct 18308 CTCCCGCCATTTATCCACATGTCATTGAACTTCTTCACTTTGATATTCAGGGCACTGGGC 18249 Query 513 AGAAATC 519 |||| || Sbjct 18248 AGAAGTC 18242 >seq387 Length=327710 Score = 104 bits (114), Expect = 8e-20 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 ||||| || ||||||| ||| ||||| || ||||||||||||||||||| ||||||||| Sbjct 282928 CTCAAGAGA-TCTTCTTCCCCTGCTGAATCTGCCAAGCCCGTTCCCTTGGTTGTGGTTTC 282986 Query 352 GCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||| || Sbjct 282987 GCTAGATAGTAGATAGGGAGAG 283008 >seq7935 Length=13368 Score = 95.1 bits (104), Expect = 4e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 2708 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 2767 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCC 98 ||| |||| ||| ||||||||| |||||||| Sbjct 2768 CTTTGACAGGTGTACCGCCCCAGTCAAACTCC 2799 >seq490 Length=208116 Score = 95.1 bits (104), Expect = 4e-17 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC-CTTAAG-AGAGTCATAGT 450 ||||||| || || ||| |||||| | ||||||| | |||||| ||| | |||| Sbjct 202574 TTCATGCATTTCCCTGATTGGATGACAAAATGTTTGGCTTCTCTTAAGGAGAATTGTAGT 202633 Query 451 TACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 |||||||||| |||| || | | ||||| ||||||||||||| |||||| ||||||| Sbjct 202634 TACTCCCGCCATTTATCCACATGTCATTGAACTTCTTCACTTTGATATTCAGGGCACTGG 202693 Query 511 GCAGAAATC 519 |||||| || Sbjct 202694 GCAGAAGTC 202702 >seq476 Length=221004 Score = 93.3 bits (102), Expect = 1e-16 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTAT 247 ||| ||||| || |||| |||| ||| |||||| |||||| | |||| |||||| Sbjct 109269 TAACTAAAAGGACAGTAAGAGTAGGGGTGTTTCACGGACGCCGACAATCCTCC-ACTTAT 109327 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG-GTCTTC 306 |||||||||| ||||| |||||||||||| ||||| || |||||| | ||| | || Sbjct 109328 TCTACACCTCCTCAGTCACTTCACAAAGTCGAACTAGGGTTAAGCTCTATAGGTTTTTTT 109387 Query 307 TTTCCCCGCTGATTCCGC 324 ||| | |||||||| || Sbjct 109388 TTTTTCGGCTGATTCTGC 109405 >seq53 Length=4381879 Score = 84.2 bits (92), Expect = 7e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||| ||| | Sbjct 4100793 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACG 4100734 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAAC 95 ||| |||| ||| ||||||||| ||||| Sbjct 4100733 CTTTGACAGGTGTACCGCCCCAGTCAAAC 4100705 >seq44 Length=4679071 Score = 82.4 bits (90), Expect = 2e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | |||| ||||||||| |||| Sbjct 2838803 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCACCTTGGGACACCTGTGTTACA 2838862 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 ||| |||| ||| || |||||| ||||||||||| Sbjct 2838863 CTTTGACAGGTGTACCACCCCAGTCAAACTCCCCA 2838897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634507182112