Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq6652 73.4 6e-11 seq3072 73.4 6e-11 >seq6652 Length=15342 Score = 73.4 bits (80), Expect = 6e-11 Identities = 83/109 (76%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | | |||| | ||||| || | || |||| || || | Sbjct 4770 GTACGAGAGGAACCGCAGG-TGCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 4827 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAG 109 | |||| ||||||||||| |||||||| ||||| |||||||| |||| Sbjct 4828 GGAGCGAGGCTACCATCTGTGGGATTATGACTGAATGCCTCTAACTCAG 4876 >seq3072 Length=28870 Score = 73.4 bits (80), Expect = 6e-11 Identities = 54/62 (87%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 58 AGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC-TAAGTCAGAATCCAT 116 ||||| |||| ||||||||| | ||||| ||| ||||||||||| ||||||||| ||||| Sbjct 7664 AGTGCAGCGATGCTACCATCCGTTGGATAATGACTGAACGCCTCTTAAGTCAGACTCCAT 7605 Query 117 GC 118 || Sbjct 7604 GC 7603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818863759616