Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq316 194 5e-47 seq7330 167 7e-39 seq410 127 6e-27 seq476 95.1 4e-17 seq396 84.2 7e-14 >seq316 Length=535046 Score = 194 bits (214), Expect = 5e-47 Identities = 164/194 (85%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 286 CCGAAGG-GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GA-AGTCGGGGTTTT 341 ||||||| | ||||||| | ||||||||||| || ||||||| || || | ||| | Sbjct 416614 CCGAAGGTGGGTTGGTTCTGTATCTAATAAACACTACCCTTCCACGAGAGAAGAGGTATG 416555 Query 342 TAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || ||||||||||| ||||||||||||||||||||||||||||| | || |||||||| Sbjct 416554 TACACATGTATTAGCCATAGAATTACCACGGTTATCCATGTAGTAAAG-ACCATCAAATA 416496 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||| ||||||||||||||||| ||||| | ||||| | ||||||||||||| Sbjct 416495 AACTATAACTGTTTTAATGAGCCATTCGCCGTTTCCCCGTATA-AAAGCTTATACTTAGA 416437 Query 461 CATGCATGGCTTAA 474 |||||||||||||| Sbjct 416436 CATGCATGGCTTAA 416423 >seq7330 Length=14380 Score = 167 bits (184), Expect = 7e-39 Identities = 137/165 (83%), Gaps = 5/165 (3%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA----CTATCAAAT 399 || ||||||||| | |||||||||||| ||||| ||||||| ||| | ||||||| Sbjct 6238 GCCTGTATTAGCCATGGAATTACCACGGGTATCCTTGTAGTAGTGTAAAGACCATCAAAT 6297 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| |||||| || ||| |||||||||||||||||| ||||||| ||||| ||||| Sbjct 6298 AAACTGTAACTGTTTCAATAAGCCATTCGCAGTTTCACCGTATAGAA-GCTTACACTTAC 6356 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||| | ||||||| |||| ||||||||| Sbjct 6357 ACATGCATGGCTTAACCTTTAATACAAGCAAATGAATACTGGCAG 6401 >seq410 Length=293098 Score = 127 bits (140), Expect = 6e-27 Identities = 86/95 (91%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| ||||||| ||||||||||||||||||| ||| | ||||| | |||||||||||| Sbjct 183334 AAACTATAACTGTTTTAATGAGCCATTCGCAGATTCGCCGTATAAAA-GCTTATACTTAG 183276 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 |||||||||||||||||||| |||||||||||||| Sbjct 183275 ACATGCATGGCTTAATCTTTAAGACAAGCATATGA 183241 >seq476 Length=221004 Score = 95.1 bits (104), Expect = 4e-17 Identities = 93/116 (80%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 |||||| |||||||||||||| || | || ||| ||||||| |||||| |||| ||| Sbjct 112304 TTACCA-GGTTATCCATGTAGCAAAG-ACCATCTAATAAACCATAACTCTTTTAGCAAGC 112361 Query 423 CATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||| |||| ||| | ||||||| | ||||||||||| ||||| || |||||||| Sbjct 112362 CATATGCAGCTTCGCCGTATAGAATT-TTATACTTAGATATGCACGGTTTAATCTT 112416 >seq396 Length=315182 Score = 84.2 bits (92), Expect = 7e-14 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||| ||||| | |||||||| ||||||||||| | || ||||| |||| Sbjct 109936 GCATGTATTAGCCATAGAACTGTCACGGTTACCCATGTAGTAAAG-ACCGTCAAAGAAAC 109994 Query 404 GATAACTGATTTAATGAGCCATTCGC 429 ||||||| ||||||||||| |||| Sbjct 109995 TATAACTGTTTTAATGAGCCTCTCGC 110020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509760058624