Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq715 123 2e-23 seq1099 118 8e-22 seq214 116 3e-21 seq3126 109 4e-19 seq45 102 6e-17 >seq715 Length=106915 Score = 123 bits (136), Expect = 2e-23 Identities = 241/353 (68%), Gaps = 16/353 (5%) Strand=Plus/Plus Query 65812 GTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGC 65871 |||||||| |||||| || || || || || || ||||| | || ||| | | || Sbjct 92318 GTCGGCCAAACCTTGCACACCTATCCCTATAGGGCGATGTCTCATGTTGCTCCTCCGTGC 92377 Query 65872 CTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATG 65931 |||||| | |||||||| ||| | ||||| | |||||||| ||| || || | || | Sbjct 92378 CTCAGGAAGAGGGTAGTGATTTCTGTCGATTACGCGATTCAGATTTCGGGTAATGACCTT 92437 Query 65932 CACGATACGTCG--CAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGAC 65989 || | || | || | || ||||||| || || | | ||| || Sbjct 92438 GACCA--CGGCCTTCAGCTTCTCATAATCAAA-TGATTTGCT---TTGGGGGT------- 92484 Query 65990 ACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCG 66049 |||||||| | ||||| | | || || |||||||| || || | |||||| Sbjct 92485 -CCACAAACCTAGGAAGTGAGACCGACGCAAGGTTGCATACGGCCACCTCGTCTTTGCTA 92543 Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 ||| ||||||| | || ||||||| || | || ||| || |||||||||| |||| Sbjct 92544 GTAAACTCGACCACCTCAGTGCACAAGTTGCCACACTTTATCGTCCCCAAATTCTTTTGA 92603 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || ||||| |||||| || || ||||||||||||||||||||||| || || Sbjct 92604 TTGCTCTTCTTATTGCAAGCGTCTTTGTACATCATGTACGGAGTGCCTGTTTC 92656 >seq1099 Length=64186 Score = 118 bits (130), Expect = 8e-22 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||||| ||||||| ||| || || | |||||| ||||| | ||||| ||| Sbjct 43483 ACAAACTTAGGAAGGGAAAGGGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTA 43542 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| |||||||| || || | ||| || | |||||||||| |||| ||| || Sbjct 43543 TACTCCACAATTTCTGTACATAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTG 43602 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || || | |||||| ||||||||||||| ||||||||| || || ||||| Sbjct 43603 CTTTTTCTATTGCAGGCATCCTTGTACAACATGTACGGCGTCCCTGTCTC 43652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 65075 GAATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCG 65134 ||||| ||||| |||| ||||| | || || |||| ||| || | |||||||| || Sbjct 42353 GAATCAACCGTAAACTTAATCGCGTCCGCCGCTGCCTGGGTTCTCATGTAGTACATTCCC 42412 Query 65135 GTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGC 65194 ||||| || || || | ||| ||||||||||||| | || | ||||| || |||| Sbjct 42413 GTCTTTAGACCGGCTCTCCAGCCATAGAAATGCATTGTGGAAAGCTTTGCGTAGGTCGGA 42472 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 | | ||| || || || | ||||||| || ||||| ||| | | | || |||| Sbjct 42473 TTGACCATGTGAATGTTTAGCGACTGAGATTGGTCGATATAAGGGGCTCTGTCCACAGCG 42532 Query 65255 ATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTACAG 65301 | ||| | || ||| | | | |||||||| || || |||||||| Sbjct 42533 AGGTCTAGAATCACACG--CTGTTTGATCTCCCACACCGTTTTGTACAG 42579 >seq214 Length=1293776 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || || || ||||||||||| ||||| ||||| |||| ||||| || Sbjct 79369 GGTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 79310 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| | ||||| | || ||||||| |||||| || ||||| ||||| || Sbjct 79309 ATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTG 79250 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| |||||||||| || ||||| || | ||||||||| Sbjct 79249 CGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 79210 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| |||||||| |||||||| || |||| || || | || || |||||||| | Sbjct 78087 CATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGCTCCTCCTT 78028 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||| || ||||||| Sbjct 78027 CCCAGTG-TTCTTCTTTAAGTCCAGAAACTCAAAGATGTCCAGGTGCCACGGCTCCAGGT 77969 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 77968 AGATGGCAAA--AGCCC 77954 >seq3126 Length=28506 Score = 109 bits (120), Expect = 4e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || ||||| | | ||||||||||||||||| |||||||||| Sbjct 13345 TGGAGCGGTTCAGTCAAGAAGTGCAGATCACAGAGGCGCGTTGTTTCTATGGCTTCCAGA 13404 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | ||||| || ||||||||| ||||||| || |||||||| Sbjct 13405 TTGCCATGGAAAACATACACTCAGAAATGTACAGTCTTCTCATTGACACGTACAT 13459 >seq45 Length=4641476 Score = 102 bits (112), Expect = 6e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 ||| ||| ||| || ||||||||||| | | || || ||||||||||| ||||||||| Sbjct 479536 TGGCACGCTTTAGC-CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAG 479478 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||| ||| |||||||| ||||||||||||||||| | || || || || ||||||| Sbjct 479477 ATTCTCATTGAGAATGTTCACTCGGAGATGTACAGCTTGCTTATAGACACTTACATCA 479420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397362706942160