Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value SEQ17312 86.0 3e-11 SEQ14747 86.0 3e-11 SEQ13481 86.0 3e-11 SEQ24689 84.2 9e-11 >SEQ17312 Length=6880 Score = 86.0 bits (94), Expect = 3e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | |||| |||||| |||||||||||||||| |||||||| ||||||| Sbjct 5919 CTCCTTGAGGCGCGGCACGCCCAGCGTCACGTTCTTGGCCGACACGCCGGCGTAGTGGAA 5860 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 || | || |||| |||||| || || || | |||| |||| | ||| || Sbjct 5859 CGTGTTCAGCGTCATCTGCGTCGCCGGTTCCCCCAACGACTGCGCCGCCAACGCGCCCAC 5800 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 5799 CATCTCACCGGG 5788 >SEQ14747 Length=7554 Score = 86.0 bits (94), Expect = 3e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | |||| |||||| |||||||||||||||| |||||||| ||||||| Sbjct 4181 CTCCTTGAGGCGCGGCACGCCCAGCGTCACGTTCTTGGCCGACACGCCGGCGTAGTGGAA 4240 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 || | || |||| |||||| || || || | |||| |||| | ||| || Sbjct 4241 CGTGTTCAGCGTCATCTGCGTCGCCGGTTCCCCCAACGACTGCGCCGCCAACGCGCCCAC 4300 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 4301 CATCTCACCGGG 4312 >SEQ13481 Length=7804 Score = 86.0 bits (94), Expect = 3e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | |||| |||||| |||||||||||||||| |||||||| ||||||| Sbjct 3253 CTCCTTGAGGCGCGGCACGCCCAGCGTCACGTTCTTGGCCGACACGCCGGCGTAGTGGAA 3194 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 || | || |||| |||||| || || || | |||| |||| | ||| || Sbjct 3193 CGTGTTCAGCGTCATCTGCGTCGCCGGTTCCCCCAACGACTGCGCCGCCAACGCGCCCAC 3134 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 3133 CATCTCACCGGG 3122 >SEQ24689 Length=2504 Score = 84.2 bits (92), Expect = 9e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 351184 CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGAT 351243 |||||||||| |||| |||||| ||||| ||||||||||| || ||| ||||| ||| Sbjct 1882 CACGCGGTGCCCCATCATGGACATCTTGTGCAGCGTGGGCTGCCGGTTGAAGATGACGAT 1823 Query 351244 GTCGCCATCGCGCAAGTGCCTCTCCACCT 351272 ||| || |||| || ||| | |||||||| Sbjct 1822 GTCACCGTCGCACATGTGGCGCTCCACCT 1794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083579890863462