Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq47468 176 7e-42 seq36274 116 6e-24 seq54198 91.5 2e-16 >seq47468 Length=89212 Score = 176 bits (194), Expect = 7e-42 Identities = 190/247 (77%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| || ||| ||||| ||||||||||||||||||||||| ||||| ||| || Sbjct 15298 TCAGTGTAGTGCTTGTGTGGCCCTGAACATCTAAGGGCATCACAGACTTGTTACTGC-TC 15356 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAGT 133 || || | |||||| | |||| | |||||||||||| | | |||| | | | Sbjct 15357 AATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGACATTGGACGCCAAGTGCTTCGG 15415 Query 134 CG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | ||| ||| || ||| | | |||| |||| |||| | |||||||||||||||| Sbjct 15416 GGTCATGTAACTAGTTTGCATGCCAGAGTCTAGTTCATTATTGAAATTAACCAGACAAAT 15475 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||| | ||||| |||||||||||||| |||||||||| ||| Sbjct 15476 CTCTCCACCAACTAAGAAGAGGCATGCCGGACCACCCATAGAATGGAGAAAGAGCTCTCA 15535 Query 252 ATCTGTC 258 ||||||| Sbjct 15536 ATCTGTC 15542 >seq36274 Length=94026 Score = 116 bits (128), Expect = 6e-24 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||| || ||||||||||||| ||||||| ||||||||||| | || Sbjct 33024 GAATTAACCAGACAAATCGCTACACCAACTAAGAATGGCCATGTACCACCACCCACATAA 33083 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| || ||||||| Sbjct 33084 TCAAGAAAGAGCTCTCCATCTGTC 33107 >seq54198 Length=96083 Score = 91.5 bits (100), Expect = 2e-16 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| ||| ||||| ||||| ||||||||||||| | |||| Sbjct 5371 CTAGTTAGCATGCCAGAATCTCTTTCATTATCAGAATTGACCAGACAAATCAGTTCACC- 5313 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||||||||| |||||||| |||||| || |||| | || ||||||| Sbjct 5312 ---AAGAATGGCCATGCACTACCACCCACAGAATC--GACAGAGGTCTCGATCTGTC 5261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796258218828