Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq23357 340 3e-91 seq12486 224 2e-56 seq53237 179 6e-43 seq11234 163 5e-38 seq7194 77.0 6e-12 >seq23357 Length=623 Score = 340 bits (376), Expect = 3e-91 Identities = 233/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 21 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 80 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 81 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 140 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 141 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 200 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 201 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGG 260 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 261 CCCCGCTTTCACGGTCTGTATTC 283 >seq12486 Length=94472 Score = 224 bits (248), Expect = 2e-56 Identities = 162/187 (87%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| ||||||||||| ||||||| || |||||||| |||||||| ||||||| Sbjct 6346 TCATCAGTAGAGTAAAACTAACTTGTCTCACGATGGTCTAAAATCAGCTCACATTCCCTA 6405 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||| ||| |||||||||||| | ||||||||||| || Sbjct 6406 GCAGTGGGTGAACAATCCAATACTTGGTGAATTCTGCTTCACAACAATAGGAAGAGCTGA 6465 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 6466 CATTGAACCATCAAAAAGCAACTTCACTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 6525 Query 211 CTGTGGT 217 ||||||| Sbjct 6526 CTGTGGT 6532 >seq53237 Length=25833 Score = 179 bits (198), Expect = 6e-43 Identities = 226/310 (73%), Gaps = 18/310 (6%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGC--GACGGTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| |||| | ||| ||||||| || |||||||||| ||||| Sbjct 14990 TACTGAGCAGGATTACTATTGCAACAAGACA-TCATCAG-AGTGTAAAACTAAGCTGTCC 15047 Query 59 CATGACGGTCTAAACCCA--------------GCTCACGTTCCCTATTAGTGGGTGAACA 104 | || |||||| |||| |||||||||||||||||||| | |||| Sbjct 15048 CTCGATAGTCTAATCCCAACAGTGTAATGCCAGCTCACGTTCCCTATTAGTGAGCAAACA 15107 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||| || |||||| |||| ||||||||||||||| ||||| |||| |||| Sbjct 15108 ATCCAACAGTTGTGGAATTCCTCTTCACAATGATAGGAAGAGCCAACATCCAAGGCTCAA 15167 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| ||||| |||| || ||||||| |||||||||||| ||||||||| |||||||| Sbjct 15168 AAAGTAACGTTGCTACAAATGCTTGGCCACCACAAGCCAGTAATCCCTGTGATAACTTTT 15227 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| |||| || | |||| | | | ||| | | |||| |||||||||| Sbjct 15228 CTGATCCCTCCTGCTTAAAATCCAAAAAGCCAGAAGAACTGTGGGGCCTCACTTTCATGC 15287 Query 285 TTTGTATTCA 294 | |||||||| Sbjct 15288 TCTGTATTCA 15297 >seq11234 Length=136384 Score = 163 bits (180), Expect = 5e-38 Identities = 142/175 (81%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||| ||||||||| |||||| |||||||||||||| | | ||||| Sbjct 45002 ATTCTGCTTCATAATGAAAGGAAGAGCTGACATCAAAGGATCAAAAAGCGATGGTGCTAT 45061 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || | Sbjct 45062 GAACGCTAGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTT 45121 Query 241 CAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| | | | |||||||| |||| |||||||| ||| |||||||| Sbjct 45122 AAAACCCAAAAAAGCCAGAAGGATCGTGAGGCTCCACTTTCACGGTCTGTATTCA 45176 >seq7194 Length=22965 Score = 77.0 bits (84), Expect = 6e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 13 TTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAA 71 |||| |||| || || ||||||||||||||||| |||| ||| || | || |||||| Sbjct 16384 TTACTATTGCAGCAACATGTCATCAGTAGGGTAAATCTAATCTGCCTTACAACAGTCTAA 16443 Query 72 ACCCAGCTCACGTTCCCTA 90 ||||| ||||||||||||| Sbjct 16444 ACCCAACTCACGTTCCCTA 16462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853800313728