Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2977 273 7e-71 seq6229 255 2e-65 seq33806 125 2e-26 seq23357 96.9 1e-17 >seq2977 Length=5441 Score = 273 bits (302), Expect = 7e-71 Identities = 178/196 (91%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | | |||||||||||||||| Sbjct 3608 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGTCTAGAGTCAAGCTCAA 3667 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| | Sbjct 3668 CAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCCCCTGGCTGTGGTTTCGCTGG 3727 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||| Sbjct 3728 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCTTCACTAATTAGATG 3787 Query 417 ACGAGGCATTTGGCTA 432 | ||||||||||| || Sbjct 3788 ATGAGGCATTTGGTTA 3803 Score = 98.7 bits (108), Expect = 3e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| | |||| |||| || |||| |||| | ||||||||||||||| ||| Sbjct 3335 CTTCTGCTCTGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACA 3394 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| ||||||||| ||||||||||||||| Sbjct 3395 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTG 3433 >seq6229 Length=1454 Score = 255 bits (282), Expect = 2e-65 Identities = 178/203 (88%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 91 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 150 Query 297 CAGGG-------TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 ||| |||||||||||| ||||||||| |||| |||||||||||||||||||| Sbjct 151 CAGCTCAACAACTCTTCTTTCCCCCCTGATTCCGTCAAGTCCGTTCCCTTGGCTGTGGTT 210 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 | ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 211 TTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAA 270 Query 410 TTAGATGACGAGGCATTTGGCTA 432 |||||||||||||| |||| ||| Sbjct 271 TTAGATGACGAGGCTTTTGACTA 293 >seq33806 Length=13560 Score = 125 bits (138), Expect = 2e-26 Identities = 80/87 (92%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||| ||||||||||||||| |||||||||| |||||| |||||||| |||||||| Sbjct 8089 CTTAAGAAAGTCATAGTTACTCCTGCCGTTTACCTGCGCTTCATTGAATTTATTCACTTT 8148 Query 494 GACATTCAGAGCACTGGGCAGAAATCA 520 ||||||||||||||| ||||||||||| Sbjct 8149 GACATTCAGAGCACTAGGCAGAAATCA 8175 >seq23357 Length=623 Score = 96.9 bits (106), Expect = 1e-17 Identities = 98/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 317 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 376 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||| |||| |||| | |||| |||||| | Sbjct 377 CTTTGACAGGTGTACCGCCCCAGTCAAACCCCCCCCCTGCCGCTGTC-----CCCGGAGC 431 Query 127 GGCCCGCG 134 || |||| Sbjct 432 GGGTCGCG 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634052285824