Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colius_20striatus_20[refseq_20GCF_5F000690715.1_202014-05-13] 70,188 sequences; 1,075,931,597 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq54367 105 5e-18 seq52070 98.7 8e-16 seq22784 89.7 4e-13 >seq54367 Length=7739 Score = 105 bits (116), Expect = 5e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || ||| || || ||||| || || || | |||||||||||||| | ||| Sbjct 7540 GAACCGCTGCTGCGGGACAACCCTCGCCGCTTTGTCATCTTCCCCATCGAGTACCATGAT 7481 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||||||| |||||||| ||||| || |||||||||||||||| ||||||||| Sbjct 7480 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 7428 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || ||||||||||| |||||||||| Sbjct 6313 TGGAGCGCTTCAGTCAAGAAGTACAAGTCACAGAAGCTCGTTGTTTCTATGGCTTCCAGA 6254 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | || || || |||||||| | || || || || ||||| Sbjct 6253 TTGCCATGGAAAACATACATTCAGAAATGTACAGCCTCCTTATTGACACCTACAT 6199 >seq52070 Length=3230 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || ||||| ||||||||||| |||| || || | |||| |||||||| | Sbjct 1239 CATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTT 1298 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||| ||| || || ||||| ||||||||||||||||| |||||| || ||||||| Sbjct 1299 GCCTGTG-TTCTTCTTTAAGTCAAGGAACTCAAAGATGTCCAAATGCCACGGCTCCAGGT 1357 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 1358 AGATGGCAAA--AGCCC 1372 >seq22784 Length=40504 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| ||||||| ||||||||||| | | || || || |||||||| ||||| |||| Sbjct 35637 TGGCACGTTTCAGTCAGGAGGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGA 35578 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||| |||||||| ||||| ||||||||||| | || || || || ||||||| Sbjct 35577 TCCTCATTGAGAATGTTCACTCAGAGATGTACAGCCTGCTGATAGACACTTACATCA 35521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397227913872320