Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq68 311 3e-82 seq189 235 2e-59 seq340 150 6e-34 seq87 138 4e-30 seq327 91.5 5e-16 seq251 89.7 2e-15 seq91 86.0 2e-14 seq529 75.2 4e-11 >seq68 Length=1429047 Score = 311 bits (344), Expect = 3e-82 Identities = 215/241 (89%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||| Sbjct 235362 CAAGCTCAACAGGATCTTCTTTCCCCGCTGATTCCACCAAGCCTGTTCC-TTGGCTGTGG 235420 Query 348 TTTCGCTAGATAGTAGA--TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||| ||| || | | | |||||||||||||||||||||| ||||||||||||| | || Sbjct 235421 TTTTGCTGGAAGGGACAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGAGACA 235480 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| |||| Sbjct 235481 CTAATTAGATGATGAGGCATTTGGCTACCTTAAGAGAGTCGTAGTTACTCCTGCCATTTA 235540 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 ||||||||| || ||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct 235541 CCCGCGCTTCATTAGATTTCTTCACTTTGACATTCAGACCACTAGGCAGAAAACACATTG 235600 Query 526 C 526 | Sbjct 235601 C 235601 >seq189 Length=1542383 Score = 235 bits (260), Expect = 2e-59 Identities = 161/181 (89%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 828216 CTGGATGGTAGGAAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTA 828157 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 | |||||||||||||||| |||| ||||||| |||| ||||||||| | ||| |||| Sbjct 828156 GCTGACGAGGCATTTGGCCACCT---GAGAGTCTCAGTTCCTCCCGCCGCTCACCTGCGC 828100 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 828099 TCCGTTGAATTTCTTCACTTTGACATTCAGAGCGCTGGGCAGAAATCACATCGCGTCAAC 828040 Query 533 A 533 | Sbjct 828039 A 828039 >seq340 Length=1958751 Score = 150 bits (166), Expect = 6e-34 Identities = 310/464 (67%), Gaps = 48/464 (10%) Strand=Plus/Plus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| ||||| |||||| ||||||||||| |||| | ||||||||| ||||| | Sbjct 232331 GATCTTCTGCTCCGCAGGAGGTTTCTGTTCTCTCTGAGATCATCTTAGGACATCTGCGAT 232390 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGG 123 ||||| | |||| ||| | ||||||| |||||||||||||||||| || | | | | || Sbjct 232391 ATGGTGTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGACACTGCCCTAGAGCAGG 232450 Query 124 ATCGGCCCGCGAAGGACCTT---AACGCCA---GAAAATGGTCGGTGAAGACCAGTTC-- 175 | ||| ||| ||| | | ||| ||| | || | ||| | | Sbjct 232451 TTGTGCC-----AGGTACTTGGCATCACCAATGGAAGCCCTTTGGGGGTCACCCCTCCAC 232505 Query 176 -CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 | | ||| || ||||| |||| | || | | |||||||||| || | ||| Sbjct 232506 ACACCTCACTGGGTAAGTGGGAAAA----ATGGTGAATAGTATTTCACTGGCAACTGAAC 232561 Query 235 -------------------------GGC-TCCCACTTATTCTACACCTCTCAAGTCATTT 268 ||| ||||| ||||| |||| |||| | ||| | Sbjct 232562 CATGGTCTGAGTTGCTCAGCCATGGGGCCTCCCATTTATTGTACATCTCTGATGTCTCCT 232621 Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328 |||| | |||| |||| ||||| ||||||||||| ||| ||| ||||| Sbjct 232622 CACAGCACCAGACTCAGGTCATGCTCA----GGTCTTCTTTCATTACTGGTTCTACCAAG 232677 Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 | |||| |||||||||||| | ||| ||||||| ||||||||||| ||||||| || | Sbjct 232678 ACTGTTCTCTTGGCTGTGGTCTTGCTGGATAGTAAGTAGGGACAGTGTGAATCTCATTCA 232737 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||| |||||| | ||| ||||| ||||| |||| ||||||||| Sbjct 232738 TCCGTTCATGTACATCATTAATTGGATGATGAGGTATTTGGCTA 232781 >seq87 Length=18212151 Score = 138 bits (152), Expect = 4e-30 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||||| ||| | || ||||| | | | |||||||| |||||| | Sbjct 17919055 CCACTTATTCTACAAGTCTTACATCTTTTCAGAGTACCAAAATAGAGTCATGCTCAAGGG 17919114 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 | |||||||| | ||||||||| ||||| | | ||||||||||| ||||| |||||| Sbjct 17919115 TGCCTTCTTTCTCTGCTGATTCCACCAAGACTGATCCCTTGGCTGAAGTTTCAATAGATA 17919174 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 |||| ||| ||||||||||||| ||| ||||||||||||| Sbjct 17919175 GTAGGTAGAAACAGTGGGAATCTTGTTCATCCATTCATGCG 17919215 >seq327 Length=12458332 Score = 91.5 bits (100), Expect = 5e-16 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||| | |||| |||| | |||||||||| |||||||||| Sbjct 6854733 CTTCTGCTCCACGGGAGTTTTCCATCCTCCCTGAGCTCGCCTTAGGACAACTGCGTTATG 6854674 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||| |||| || |||||| || ||||||||||||||| || Sbjct 6854673 CTTTGACAGGCGTACCGCCC-AGTCAAACTCCCCACCTGCCA 6854633 >seq251 Length=2849930 Score = 89.7 bits (98), Expect = 2e-15 Identities = 97/129 (75%), Gaps = 5/129 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| | |||| |||| |||||||||||| |||||| | Sbjct 2279311 CTTCTGCTCCGCGGGAGGTTTCCTTCCTCCCTGAGCTTGCCTTAGGACACCAGCGTTACG 2279252 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| ||| ||| ||||||||| ||||||||||||||| | |||| |||||| | Sbjct 2279251 CTTTGACAAGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC-----CCCGGAGC 2279197 Query 127 GGCCCGCGA 135 || ||||| Sbjct 2279196 GGGTCGCGA 2279188 >seq91 Length=4318309 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| || |||| | | | |||| | |||||||||||||| |||||| Sbjct 1713474 CTTCTGCTCCACAGAAGGTTTCCATCCATCCTGAGCTCACCTTAGGACACCTGTGTTATG 1713415 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || |||| ||| | ||||||| |||||||| |||||| || |||| Sbjct 1713414 CTTCGACAGGTGTACTGCCCCAGTCAAACTCCTCACCTGCCACTGTC 1713368 >seq529 Length=205752 Score = 75.2 bits (82), Expect = 4e-11 Identities = 73/93 (78%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| |||||| |||| | || | |||| | ||||||||||||| |||||| Sbjct 100863 CTTCTGCTCTTCAGGAGGTTTCCATCCTTCCTGAGCTCACCTTAGGACACCTATGTTATG 100922 Query 67 GTTTAACAGATGT-GCCGCCCCAGCCAAACTCC 98 ||| |||| ||| ||||| ||| |||||||| Sbjct 100923 CTTTGACAGGTGTACCCGCCTCAGTCAAACTCC 100955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634955979104