Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1152 147 7e-33 seq6800 98.7 3e-18 >seq1152 Length=205807 Score = 147 bits (162), Expect = 7e-33 Identities = 136/168 (81%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG---GTACT-ATCA 396 || |||||||||||||||||||||||||| ||||||| | | | | | | | || Sbjct 169876 TTGGCATGTATTAGCTCTAGAATTACCACAATTATCCAAAGAACAGGAGAGGAGTGACCA 169935 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 || ||| ||||||||||||||||||||||| || ||||| | || | || | |||| Sbjct 169936 AAGGAACCATAACTGATTTAATGAGCCATTCACACTTTCATT-TACTGCCTGTGTGTACT 169994 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 169995 TAGACATGCATGGCTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 170041 >seq6800 Length=250 Score = 98.7 bits (108), Expect = 3e-18 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||| Sbjct 165 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 224 Query 63 CCGTGTCGGGATTGGGTAATTTGCGC 88 ||| ||||||| |||||||||||||| Sbjct 225 CCGGGTCGGGAGTGGGTAATTTGCGC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510174603008