Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq266 129 5e-25
seq29 95.1 1e-14
seq243 87.8 1e-12
>seq266
Length=585698
Score = 129 bits (142), Expect = 5e-25
Identities = 128/162 (79%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| || || || |||||||| || ||||| |||||||||| ||||| ||
Sbjct 268200 GGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 268141
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| |||||||| ||||| || || ||||||| ||||||||| ||||||||||| ||
Sbjct 268140 GTTGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTG 268081
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
||||| |||||||||| || ||||| || | |||||||||
Sbjct 268080 CGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 268041
Score = 111 bits (122), Expect = 1e-19
Identities = 109/137 (80%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || ||||| || ||||||||||| |||| || || | ||||| |||||||| |
Sbjct 266863 CATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCCTCCTT 266804
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || |||||||||||||||||||||||| |||||| || |||||||
Sbjct 266803 CCCCGTG-TTCTTCTTCAAGTCGAGGAACTCAAAGATGTCCAGATGCCACGGCTCCAGGT 266745
Query 66459 AGATGGCGAACGAGCCC 66475
|||||||||| |||||
Sbjct 266744 AGATGGCGAA--AGCCC 266730
>seq29
Length=8961240
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||| |||||| ||||||||||| | | || || ||||||||||| ||||| ||||
Sbjct 504781 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 504840
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||| ||||| || ||||| ||||||||||| | ||||| || || |||||||
Sbjct 504841 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 504897
>seq243
Length=25666195
Score = 87.8 bits (96), Expect = 1e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101
||||| || || || ||||| | ||||||||| |||| | || || |||| ||||||
Sbjct 20266986 GAGAACCCCCGCCGGTTCGTCGTCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 20267045
Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|| ||||| || || ||||||||||||| |||||||||
Sbjct 20267046 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 20267083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397495692692720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |