Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq266 129 5e-25 seq29 95.1 1e-14 seq243 87.8 1e-12 >seq266 Length=585698 Score = 129 bits (142), Expect = 5e-25 Identities = 128/162 (79%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || |||||||| || ||||| |||||||||| ||||| || Sbjct 268200 GGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 268141 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||| ||||| || || ||||||| ||||||||| ||||||||||| || Sbjct 268140 GTTGCTCTTGCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTG 268081 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||| |||||||||| || ||||| || | ||||||||| Sbjct 268080 CGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 268041 Score = 111 bits (122), Expect = 1e-19 Identities = 109/137 (80%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||||||||| |||| || || | ||||| |||||||| | Sbjct 266863 CATGAAGAGATCTGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCCTCCTT 266804 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||||||||||||||||||||| |||||| || ||||||| Sbjct 266803 CCCCGTG-TTCTTCTTCAAGTCGAGGAACTCAAAGATGTCCAGATGCCACGGCTCCAGGT 266745 Query 66459 AGATGGCGAACGAGCCC 66475 |||||||||| ||||| Sbjct 266744 AGATGGCGAA--AGCCC 266730 >seq29 Length=8961240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 504781 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 504840 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 504841 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 504897 >seq243 Length=25666195 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 20266986 GAGAACCCCCGCCGGTTCGTCGTCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 20267045 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 20267046 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 20267083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397495692692720