Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corvus_20brachyrhynchos_20[refseq_20GCF_5F000691975.1_202014-06-02] 10,547 sequences; 1,091,312,783 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3784 143 5e-32 >seq3784 Length=2528729 Score = 143 bits (158), Expect = 5e-32 Identities = 184/246 (75%), Gaps = 16/246 (7%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGG 132 |||||||||| ||||| ||||||||||||||||||| ||| | |||| ||| || Sbjct 2330990 TTTACTTTGAGAAAATCAGAGTGTTCAAAGCAGGCCGGCCGCTGGCATACTGCAGCTAGG 2331049 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||| |||||||||||||| || | || | ||||||| Sbjct 2331050 AATAATGGAATAGGAC-TCCGGTTCCATTTTGTTGGTTTC-AGAAACGGGGCCATGATTA 2331107 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCA-ATTGT-----CAGAGGTGAAATTCTTGGAT 246 | ||||| | |||||| | ||||| ||||| |||||||||||||||||| Sbjct 2331108 AGAGGGA-CGGCGGGGG-----GCATTCATATTGTGCCGCTAGAGGTGAAATTCTTGGAC 2331161 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| ||| || ||||| || ||||| |||||||||||||||| |||| Sbjct 2331162 CGGCACAAGATGGCCTAGAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAAC 2331220 Query 307 GAAAGT 312 ||||| Sbjct 2331221 AAAAGT 2331226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915103473856