Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corvus_20brachyrhynchos_20[refseq_20GCF_5F000691975.1_202014-06-02] 10,547 sequences; 1,091,312,783 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1412 118 4e-24 seq697 77.0 1e-11 >seq1412 Length=7078826 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 7068860 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 7068919 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 7068920 ACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 7068979 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 7068980 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 7069019 >seq697 Length=10596748 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135 |||||| | | ||||| |||||||| |||| |||||||||||| ||||||| || | Sbjct 4209747 GGTAAACTCCATCTAAGGCTAAATACTGGCACGAGACCGATAGCCAACAAGTACCGTAAG 4209806 Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA 170 ||||| || |||| ||||| | |||||||| || Sbjct 4209807 GGAAAGTTGGAAAGAGCTTTGAAGAGAGAGTTCAA 4209841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079773766850