Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corvus_20brachyrhynchos_20[refseq_20GCF_5F000691975.1_202014-06-02] 10,547 sequences; 1,091,312,783 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2879 338 1e-90 seq10543 167 4e-39 seq2606 80.6 5e-13 >seq2879 Length=24416 Score = 338 bits (374), Expect = 1e-90 Identities = 252/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 11740 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 11681 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 11680 ACGACGGTCTAAACCCAGCTCACGTTCCCTAGTAGTGGGTGAACAATCCAACGCTTGGTG 11621 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 11620 AATTCTGCTTCACAATGATAGGAAGAGCTGACATTGAAGGATCAAAAAGCAACGTCGCTA 11561 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 11560 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 11501 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 11500 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 11447 >seq10543 Length=5282723 Score = 167 bits (184), Expect = 4e-39 Identities = 169/219 (77%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||||||||| | |||||| | |||||||||| ||||| | | |||||||| ||| Sbjct 3640114 CCAGCTCACCTCCCCTATCA-TGGGTGAACAGTCCAATGTCTGGTGAATTCTGTTTCACA 3640056 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||| | || |||||||||||||| | || ||||||||| |||||||| Sbjct 3640055 TCAATAGGAAGAGCCAAGATGGAAGGATCAAAAAGTGATGTTGCTATGAACACTTGGCTG 3639996 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||||||||| ||||||||||||||||||||| || ||| || | ||| | | | Sbjct 3639995 CCACAAGCCAGTCATCCCTGTGGTAACTTTTCTGACATCTCCTGCTTGAAACACCAAAAG 3639936 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| ||| ||||| |||||||| || |||||| Sbjct 3639935 GCAGAAGAATCATGAGGCCCCACTTTCACAGTCTGTATT 3639897 >seq2606 Length=8823540 Score = 80.6 bits (88), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 19/217 (9%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| | | |||||||||| | |||||| | || |||||||||||| || Sbjct 4756751 TCATCAGCAAGATAAAACTAACTTTCCTCATGGCTGTTTAAACCCAGCTCGCG------- 4756803 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| || || ||| ||||| ||| |||||||| || | | ||| ||||| |||| | Sbjct 4756804 TTAATGAGTAAACTGACCAACACTTGGTGAATTCTGTTTTGTTGTGACAGGAACAGCCAA 4756863 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT---GGCTGCCACAAGCCAGTTA 207 |||| | | | |||| || | | | ||| ||| ||||| ||| ||| | Sbjct 4756864 CATCAATTGTT---AAAGTGACTTTGAT---AACACTTGAGGGCTG-TACA--GCAGCTT 4756914 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 || |||||||||| || |||||| |||| || | ||| Sbjct 4756915 TCTCTGTGGTAACCTTACTGGCATCTCTTGCTTAAAA 4756951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854309886432