Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corvus_20brachyrhynchos_20[refseq_20GCF_5F000691975.1_202014-06-02] 10,547 sequences; 1,091,312,783 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq673 279 2e-72 seq2879 273 7e-71 seq1685 226 9e-57 seq2924 161 3e-37 seq2416 116 1e-23 seq2161 77.0 1e-11 >seq673 Length=1843724 Score = 279 bits (308), Expect = 2e-72 Identities = 183/201 (91%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| Sbjct 1581892 TCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAAC 1581833 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| || Sbjct 1581832 AGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGA 1581773 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||||||||| |||| ||||||| | ||||||||||||||| Sbjct 1581772 TAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCGTTCATGCACATCACTAATTAGATGA 1581713 Query 418 CGAGGCATTTGGCTACCTTAA 438 ||||||||||||||| ||||| Sbjct 1581712 CGAGGCATTTGGCTA-CTTAA 1581693 >seq2879 Length=24416 Score = 273 bits (302), Expect = 7e-71 Identities = 178/196 (91%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||| | | | |||||||||||||||||| Sbjct 11150 CTCCCACTTATTCTACACCTCTCATGTCTCTTCAAAGCGCCAGACTAGAGTCAAGCTCAA 11091 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| | Sbjct 11090 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCTGGTCCCTTGGCTGTGGTTTCGCTGG 11031 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| |||||||||||||||||| ||||||||| || |||||||||||||||| Sbjct 11030 ATAGTAGGTAGTGACAGTGGGAATCTCGTTCATCCATTCACGCACGTCACTAATTAGATG 10971 Query 417 ACGAGGCATTTGGCTA 432 || ||||||||||||| Sbjct 10970 ACAAGGCATTTGGCTA 10955 Score = 230 bits (254), Expect = 8e-58 Identities = 166/195 (85%), Gaps = 14/195 (7%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||||||||||||||| ||| ||||||| | | ||||||||||| ||||||| Sbjct 495 TCCCACTTATTCTACACCTCTCATGTCTTTTCACAGCGCCAGACTAGAGTCAGGCTCAAC 436 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct 435 AGGGTCTTCTTTCCCCACTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGA 376 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||| | |||||||||| ||||||||||||| ||||||||||||||| Sbjct 375 TAGTGGGTAGGGACAGT--------------TCCATTCATGCGCATCACTAATTAGATGA 330 Query 418 CGAGGCATTTGGCTA 432 ||| ||||| ||||| Sbjct 329 CGATGCATTAGGCTA 315 Score = 150 bits (166), Expect = 6e-34 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 14073 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACCT 14014 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| | ||||||| Sbjct 14013 GGACATTCAGAGCACTGGGCAGAAATCACACAGTGTCAACA 13973 >seq1685 Length=2648 Score = 226 bits (250), Expect = 9e-57 Identities = 170/200 (85%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 ||| ||||||||||||| |||||||||| ||| || | | | || |||||||||| Sbjct 1099 ACGCCTCCCACTTATTCCACACCTCTCATGTCTCGTCGGAGCGCCAGAGCAGAGTCAAGC 1040 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||| | || ||| |||||||| |||||||||||||||||||| Sbjct 1039 TCAACAGGGTCTTCTTTCCGTGTTGCTTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCT 980 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || ||||||| ||||||||||||||||||| || |||||||||| | | |||||||||| Sbjct 979 CTGGATAGTAAGTAGGGACAGTGGGAATCTCATTGATCCATTCATTCACATCACTAATTA 920 Query 413 GATGACGAGGCATTTGGCTA 432 ||||| |||||||||||||| Sbjct 919 GATGATGAGGCATTTGGCTA 900 >seq2924 Length=64252 Score = 161 bits (178), Expect = 3e-37 Identities = 100/107 (93%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 55717 CTCCCACTTATTCTACACCTCTCACGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 55776 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55777 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 55823 Score = 150 bits (166), Expect = 6e-34 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 42120 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACCT 42061 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| | ||||||| Sbjct 42060 GGACATTCAGAGCACTGGGCAGAAATCACACAGTGTCAACA 42020 >seq2416 Length=47514 Score = 116 bits (128), Expect = 1e-23 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 ||||||| | |||| ||| ||||||| |||||||||||||||||||||||||||||| Sbjct 145 TAGTTACGCTGGCCGCTTATTCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCA 204 Query 507 CTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||| ||||||||| Sbjct 205 CTGGGCAGAAATCACATGGCGTCAACA 231 Score = 113 bits (124), Expect = 1e-22 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||| ||| ||||||| | || ||||||||| ||||| Sbjct 25309 CTTAAGAGAGTCATAGTTACTCCTGCCATTTACCCATGTTTCACTGAATTTCTGCACTTG 25368 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| || |||||||||||||||||| | |||| Sbjct 25369 GACATTCAGATCAGTGGGCAGAAATCACATTGTATTAACA 25408 >seq2161 Length=8079061 Score = 77.0 bits (84), Expect = 1e-11 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||| | || | || |||||| || | ||| || ||| |||||||||||||||| Sbjct 6052114 CTTAAGAAAATCCCAAGTCACTCCCACCATCTACT-GCACTTCATTGAATTTCTTCACTT 6052056 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||||| | |||||||||||||||||||| Sbjct 6052055 TGACATGCCAGGCACTGGGCAGAAATCACAT 6052025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635027535456