Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Corvus_20brachyrhynchos_20[refseq_20GCF_5F000691975.1_202014-06-02]
10,547 sequences; 1,091,312,783 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq673 279 2e-72
seq2879 273 7e-71
seq1685 226 9e-57
seq2924 161 3e-37
seq2416 116 1e-23
seq2161 77.0 1e-11
>seq673
Length=1843724
Score = 279 bits (308), Expect = 2e-72
Identities = 183/201 (91%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
||||||||||||||||||||||| ||| |||||| | |||||||||||||||||||
Sbjct 1581892 TCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAAC 1581833
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 1581832 AGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGA 1581773
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
|||||| |||||||||||||||||||||| |||| ||||||| | |||||||||||||||
Sbjct 1581772 TAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCGTTCATGCACATCACTAATTAGATGA 1581713
Query 418 CGAGGCATTTGGCTACCTTAA 438
||||||||||||||| |||||
Sbjct 1581712 CGAGGCATTTGGCTA-CTTAA 1581693
>seq2879
Length=24416
Score = 273 bits (302), Expect = 7e-71
Identities = 178/196 (91%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| |||| | | | ||||||||||||||||||
Sbjct 11150 CTCCCACTTATTCTACACCTCTCATGTCTCTTCAAAGCGCCAGACTAGAGTCAAGCTCAA 11091
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |
Sbjct 11090 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCTGGTCCCTTGGCTGTGGTTTCGCTGG 11031
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||| |||||||||||||||||| ||||||||| || ||||||||||||||||
Sbjct 11030 ATAGTAGGTAGTGACAGTGGGAATCTCGTTCATCCATTCACGCACGTCACTAATTAGATG 10971
Query 417 ACGAGGCATTTGGCTA 432
|| |||||||||||||
Sbjct 10970 ACAAGGCATTTGGCTA 10955
Score = 230 bits (254), Expect = 8e-58
Identities = 166/195 (85%), Gaps = 14/195 (7%)
Strand=Plus/Minus
Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297
||||||||||||||||||||||| ||| ||||||| | | ||||||||||| |||||||
Sbjct 495 TCCCACTTATTCTACACCTCTCATGTCTTTTCACAGCGCCAGACTAGAGTCAGGCTCAAC 436
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 435 AGGGTCTTCTTTCCCCACTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGA 376
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
|||| | |||||||||| ||||||||||||| |||||||||||||||
Sbjct 375 TAGTGGGTAGGGACAGT--------------TCCATTCATGCGCATCACTAATTAGATGA 330
Query 418 CGAGGCATTTGGCTA 432
||| ||||| |||||
Sbjct 329 CGATGCATTAGGCTA 315
Score = 150 bits (166), Expect = 6e-34
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 14073 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACCT 14014
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||| | |||||||
Sbjct 14013 GGACATTCAGAGCACTGGGCAGAAATCACACAGTGTCAACA 13973
>seq1685
Length=2648
Score = 226 bits (250), Expect = 9e-57
Identities = 170/200 (85%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292
||| ||||||||||||| |||||||||| ||| || | | | || ||||||||||
Sbjct 1099 ACGCCTCCCACTTATTCCACACCTCTCATGTCTCGTCGGAGCGCCAGAGCAGAGTCAAGC 1040
Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352
||||||||||||||||||| | || ||| |||||||| ||||||||||||||||||||
Sbjct 1039 TCAACAGGGTCTTCTTTCCGTGTTGCTTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCT 980
Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412
|| ||||||| ||||||||||||||||||| || |||||||||| | | ||||||||||
Sbjct 979 CTGGATAGTAAGTAGGGACAGTGGGAATCTCATTGATCCATTCATTCACATCACTAATTA 920
Query 413 GATGACGAGGCATTTGGCTA 432
||||| ||||||||||||||
Sbjct 919 GATGATGAGGCATTTGGCTA 900
>seq2924
Length=64252
Score = 161 bits (178), Expect = 3e-37
Identities = 100/107 (93%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| |||||| | | ||||||||||||||||||
Sbjct 55717 CTCCCACTTATTCTACACCTCTCACGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 55776
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55777 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 55823
Score = 150 bits (166), Expect = 6e-34
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 42120 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACCT 42061
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||| | |||||||
Sbjct 42060 GGACATTCAGAGCACTGGGCAGAAATCACACAGTGTCAACA 42020
>seq2416
Length=47514
Score = 116 bits (128), Expect = 1e-23
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506
||||||| | |||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 145 TAGTTACGCTGGCCGCTTATTCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCA 204
Query 507 CTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||| |||||||||
Sbjct 205 CTGGGCAGAAATCACATGGCGTCAACA 231
Score = 113 bits (124), Expect = 1e-22
Identities = 85/100 (85%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||||||||||||||||||||| ||| ||||||| | || ||||||||| |||||
Sbjct 25309 CTTAAGAGAGTCATAGTTACTCCTGCCATTTACCCATGTTTCACTGAATTTCTGCACTTG 25368
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||| || |||||||||||||||||| | ||||
Sbjct 25369 GACATTCAGATCAGTGGGCAGAAATCACATTGTATTAACA 25408
>seq2161
Length=8079061
Score = 77.0 bits (84), Expect = 1e-11
Identities = 73/91 (80%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||| | || | || |||||| || | ||| || ||| ||||||||||||||||
Sbjct 6052114 CTTAAGAAAATCCCAAGTCACTCCCACCATCTACT-GCACTTCATTGAATTTCTTCACTT 6052056
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACAT 523
|||||| | ||||||||||||||||||||
Sbjct 6052055 TGACATGCCAGGCACTGGGCAGAAATCACAT 6052025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635027535456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |